Datasets:
ptsw
/
ref_seq_viral_tandemrepeats

Dataset card Data Studio Files Community
1
id
stringlengths
11
11
start_pos
int64
1
2.47M
end_pos
int64
16
2.47M
motif_seq
stringlengths
8
100
motif_length
int64
8
100
repeats
int64
2
96
ltr_length
int64
16
2.42k
__index_level_0__
int64
0
1.24k
NC_047729.1
113,411
113,492
TACTATTACTACTACTAAGTACCTTTGTTATGTACTACTAT
41
2
82
19
NC_047730.1
35,271
35,286
CAAATGAA
8
2
16
0
NC_047730.1
43,237
43,254
ATAAAAAAG
9
2
18
1
NC_047730.1
55,990
56,007
AGCTAAGAA
9
2
18
2
NC_047730.1
56,191
56,208
AGCTATAGG
9
2
18
3
NC_047730.1
57,437
57,460
TTCTGATAGTGG
12
2
24
4
NC_047730.1
58,006
58,023
ATGCTTCTA
9
2
18
5
NC_047730.1
88,424
88,439
GTAATTAA
8
2
16
6
NC_047730.1
92,087
92,102
ATATGGAG
8
2
16
7
NC_047730.1
99,888
99,903
GATAAAAA
8
2
16
8
NC_047730.1
105,186
105,203
AACAAGAGG
9
2
18
9
NC_047730.1
105,607
105,628
GTAATAGATAT
11
2
22
10
NC_047730.1
116,564
116,579
TTACCTAC
8
2
16
11
NC_047730.1
119,231
119,248
AAACAATAC
9
2
18
12
NC_047730.1
124,876
124,897
CCTGTTGACAG
11
2
22
13
NC_047730.1
128,406
128,425
AAATAATTAA
10
2
20
14
NC_047730.1
128,582
128,599
TATGTAGAT
9
2
18
15
NC_047730.1
129,175
129,222
TGGGAAAAAGAAGGAGTTAACTAT
24
2
48
16
NC_047730.1
131,569
131,628
TACTACTATTAC
12
5
60
17
NC_047730.1
131,629
131,680
TACTACTAAGTACCTTTGTTATGTAC
26
2
52
18
NC_047730.1
131,687
131,738
TACTACTACTAAGTACCTTTGTTATG
26
2
52
19
NC_047730.1
131,739
131,774
TACTACTATTAC
12
3
36
20
NC_047730.1
131,775
131,810
TATTACTACTACTATTAC
18
2
36
21
NC_047730.1
131,811
131,840
TATTACTACTATTAC
15
2
30
22
NC_047730.1
131,850
131,897
TACTACTACTAT
12
4
48
23
NC_047730.1
131,898
131,915
TACTACTAT
9
2
18
24
NC_047730.1
131,919
131,936
TACTACTAT
9
2
18
25
NC_047730.1
131,937
132,008
TACTACTACTAT
12
6
72
26
NC_047730.1
137,165
137,182
TTTTTTATA
9
2
18
27
NC_047730.1
138,286
138,385
AACCATGATATTATTAAGATAACAAAAAACAAACAGAAAAGGAATTGATT
50
2
100
28
NC_047732.1
1,633
1,648
TTCATTTG
8
2
16
0
NC_047732.1
4,042
4,151
TTACTATCTTCCTCTACTCTTCTTTGTGCTTTAGCCCTAACTTTTATCTCTTCTG
55
2
110
1
NC_047732.1
42,527
42,636
AAATATTATGAAATATATGAAAGTAAATTTTATGTAGATGAGGAAACAACAAAAG
55
2
110
2
NC_047732.1
45,901
45,924
TAGTAATAGTAG
12
2
24
3
NC_047732.1
45,925
46,029
TACATAACAAAGGTACTTAGTAGTAGTAATAGTAG
35
3
105
4
NC_047732.1
46,084
46,107
TAGTAATAGTAG
12
2
24
5
NC_047732.1
46,108
46,153
TACATAACAAAGGTACTTAGTAG
23
2
46
6
NC_047732.1
46,154
46,225
TAGTAATAGTAG
12
6
72
7
NC_047732.1
46,232
46,279
TAGTAATAGTAG
12
4
48
8
NC_047732.1
48,635
48,682
TTTTCCCAATAGTTAACTCCTTCT
24
2
48
9
NC_047732.1
49,266
49,283
ATCTACATA
9
2
18
10
NC_047732.1
49,440
49,459
TTAATTATTT
10
2
20
11
NC_047732.1
52,967
52,988
GCTGTCAACAG
11
2
22
12
NC_047732.1
58,618
58,635
TTTGTATTG
9
2
18
13
NC_047732.1
61,290
61,305
GTAGGTAA
8
2
16
14
NC_047732.1
72,244
72,265
ATATCTATTAC
11
2
22
15
NC_047732.1
72,667
72,684
TTCCTCTTG
9
2
18
16
NC_047732.1
77,970
77,985
TTTTTATC
8
2
16
17
NC_047732.1
85,772
85,787
TCTCCATA
8
2
16
18
NC_047732.1
89,436
89,451
TTAATTAC
8
2
16
19
NC_047732.1
119,857
119,874
TAGAAGCAT
9
2
18
20
NC_047732.1
120,420
120,443
CCACTATCAGAA
12
2
24
21
NC_047732.1
121,671
121,688
GCTCCTATA
9
2
18
22
NC_047732.1
121,874
121,891
TTTCTTAGC
9
2
18
23
NC_047732.1
124,419
124,528
AGTTTAAGAATCCTAACCAATCTTCATACATAACAGTTAAAGGATATAAGTTATA
55
2
110
24
NC_047732.1
134,686
134,703
TCTTTTTTA
9
2
18
25
NC_047731.1
3,433
3,452
AAATAATTAA
10
2
20
0
NC_047731.1
3,609
3,626
TATGTAGAT
9
2
18
1
NC_047731.1
4,202
4,249
TGGGAAAAAGAAGGAGTTAACTAT
24
2
48
2
NC_047731.1
6,637
6,708
TACTACTATTAC
12
6
72
3
NC_047731.1
6,732
6,755
TACTACTATTAC
12
2
24
4
NC_047731.1
6,756
6,837
TACTATTACTACTACTAAGTACCTTTGTTATGTACTACTAT
41
2
82
5
NC_047731.1
9,272
9,371
AATTTACTAGTAGATATTAGAAGACAAGGCGTATTTGATTTCAATCACAT
50
2
100
6
NC_047731.1
50,022
50,037
CAAATGAA
8
2
16
7
NC_047731.1
58,006
58,023
ATAAAAAAG
9
2
18
8
NC_047731.1
70,762
70,779
AGCTAAGAA
9
2
18
9
NC_047731.1
70,963
70,980
AGCTATAGG
9
2
18
10
NC_047731.1
72,211
72,234
TTCTGATAGTGG
12
2
24
11
NC_047731.1
72,780
72,797
ATGCTTCTA
9
2
18
12
NC_047731.1
103,202
103,217
GTAATTAA
8
2
16
13
NC_047731.1
106,865
106,880
ATATGGAG
8
2
16
14
NC_047731.1
114,667
114,682
GATAAAAA
8
2
16
15
NC_047731.1
119,966
119,983
AACAAGAGG
9
2
18
16
NC_047731.1
120,387
120,408
GTAATAGATAT
11
2
22
17
NC_047731.1
131,338
131,353
TTACCTAC
8
2
16
18
NC_047731.1
134,005
134,022
AAACAATAC
9
2
18
19
NC_047731.1
139,653
139,674
CCTGTTGACAG
11
2
22
20
NC_055053.1
1,723
1,740
TCAAGAGCA
9
2
18
0
NC_028944.1
45,302
45,319
GACCAGTTA
9
2
18
0
NC_028944.1
56,105
56,122
GTTCTGGTG
9
2
18
1
NC_028944.1
78,752
78,771
CAAAACTTAT
10
2
20
2
NC_074765.1
1,846
1,890
TCTGAGGGTGGCGGT
15
3
45
0
NC_055055.1
121
136
CCCCTACA
8
2
16
0
NC_074656.1
1,388
1,405
CTTTTTACA
9
2
18
0
NC_074656.1
6,822
6,837
CTTTTTTT
8
2
16
1
NC_074656.1
13,928
13,963
ATCACCAAAGAGTCCAAA
18
2
36
2
NC_074656.1
20,017
20,034
GTGGACGTA
9
2
18
3
NC_074656.1
20,289
20,306
CAACAAGAA
9
2
18
4
NC_074656.1
23,924
23,943
TAGTCAAGAA
10
2
20
5
NC_074656.1
23,944
23,963
TGGTCAAGAA
10
2
20
6
NC_074657.1
258
277
TGTGAATTGA
10
2
20
0
NC_074657.1
1,387
1,404
CTTTTTACA
9
2
18
1
NC_074657.1
6,821
6,836
CTTTTTTT
8
2
16
2
NC_074657.1
13,939
13,974
GTCACCAAAGAGTCCAAA
18
2
36
3
NC_074657.1
20,310
20,327
CAACAAGAA
9
2
18
4
NC_074657.1
24,933
24,952
TAGTCAAGAA
10
2
20
5
NC_074657.1
24,953
24,972
TGGTCAAGAA
10
2
20
6
NC_079144.1
240
263
CGCGAGTACATG
12
2
24
0
NC_079144.1
9,042
9,057
ACAACCGC
8
2
16
1
NC_079144.1
23,341
23,358
GCGGCACGG
9
2
18
2