File size: 1,334 Bytes
0f6dde7
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
{
    "major_version": 2,
    "minor_version": 0,
    "run_name": "morphology_focus",
    "region_name": "cell_circles",
    "experiment_uuid": "",
    "panel_tissue_type": "N/A",
    "run_start_time": "N/A",
    "preservation_method": "N/A",
    "num_cells": 36602,
    "transcripts_per_cell": 0,
    "transcripts_per_100um": 0,
    "cassette_name": "N/A",
    "slide_id": "N/A",
    "panel_design_id": "N/A",
    "panel_name": "N/A",
    "panel_organism": "Human",
    "panel_num_targets_predesigned": 0,
    "panel_num_targets_custom": 0,
    "pixel_size": 0.2125,
    "instrument_sn": "N/A",
    "instrument_sw_version": "N/A",
    "analysis_sw_version": "xenium-1.3.0.5",
    "cassette_uuid": "",
    "roi_uuid": "",
    "z_step_size": 3.0,
    "well_uuid": "",
    "calibration_uuid": "N/A",
    "images": {
        "morphology_filepath": "morphology.ome.tif",
        "morphology_mip_filepath": "morphology_mip.ome.tif",
        "morphology_focus_filepath": "morphology_focus.ome.tif"
    },
    "xenium_explorer_files": {
        "transcripts_zarr_filepath": "transcripts.zarr.zip",
        "cells_zarr_filepath": "cells.zarr.zip",
        "cell_features_zarr_filepath": "cell_feature_matrix.zarr.zip",
        "analysis_zarr_filepath": "analysis.zarr.zip",
        "analysis_summary_filepath": "analysis_summary.html"
    }
}