Upload 6 files
Browse files- .gitattributes +1 -0
- TGME49_transcript_annotations.tsv +0 -0
- data/estiamted_expression_meta.tsv +911 -0
- data/estimated_expression.parquet +3 -0
- networks/blastp_network.parquet +3 -0
- networks/coexp_network.parquet +3 -0
- top_coexp_hits.tsv +3 -0
.gitattributes
CHANGED
@@ -53,3 +53,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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*.jpg filter=lfs diff=lfs merge=lfs -text
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*.jpeg filter=lfs diff=lfs merge=lfs -text
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*.webp filter=lfs diff=lfs merge=lfs -text
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+
top_coexp_hits.tsv filter=lfs diff=lfs merge=lfs -text
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TGME49_transcript_annotations.tsv
ADDED
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data/estiamted_expression_meta.tsv
ADDED
@@ -0,0 +1,911 @@
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1 |
+
study_accession run_accession is_paired n_reads n_reads_aligned_0_times n_reads_aligned_1_time n_reads_aligned_mutiple_times overall_alignment_percent run_time
|
2 |
+
SRP309740 SRR13889781 FALSE 41237736 38620433 2523127 94176 6.35 2445.495
|
3 |
+
SRP309740 SRR13889782 FALSE 37995771 36562149 1373751 59871 3.77 2663.809
|
4 |
+
SRP309740 SRR13889783 FALSE 40578132 39550065 974433 53634 2.53 2529.925
|
5 |
+
SRP309740 SRR13889784 FALSE 38344866 28417675 9572302 354889 25.89 2823.701
|
6 |
+
SRP309740 SRR13889785 FALSE 37575964 32476310 4914044 185610 13.57 2393.679
|
7 |
+
SRP309740 SRR13889786 FALSE 38827405 33647745 4941301 238359 13.34 2568.701
|
8 |
+
SRP309740 SRR13889787 FALSE 42408400 31685353 10318755 404292 25.29 3132.972
|
9 |
+
SRP309740 SRR13889788 FALSE 34560117 28268638 6059216 232263 18.2 2313.337
|
10 |
+
SRP309740 SRR13889789 FALSE 41636277 36239837 5196237 200203 12.96 2580.762
|
11 |
+
SRP309740 SRR13889790 FALSE 40160501 29905693 9819690 435118 25.53 2980.468
|
12 |
+
SRP309740 SRR13889791 FALSE 34576217 27078208 7178432 319577 21.69 3486.25
|
13 |
+
SRP309740 SRR13889792 FALSE 39384666 35675378 3567242 142046 9.42 3412.568
|
14 |
+
SRP309740 SRR13889793 FALSE 41823890 37295719 4329868 198303 10.83 2436.73
|
15 |
+
SRP309740 SRR13889794 FALSE 39084181 36469338 2496104 118739 6.69 2346.321
|
16 |
+
SRP309740 SRR13889795 FALSE 38540961 36173416 2253601 113944 6.14 2335.522
|
17 |
+
SRP348188 SRR17053209 TRUE 15287486 5084974 9907219 295293 66.74 6836.988
|
18 |
+
SRP348188 SRR17053198 TRUE 18542111 6424456 11795781 321874 65.35 8217.901
|
19 |
+
SRP348188 SRR17053199 TRUE 18239225 6176042 11751102 312081 66.14 7894.439
|
20 |
+
SRP348188 SRR17053200 TRUE 18698870 6337920 12040758 320192 66.11 9232.093
|
21 |
+
SRP348188 SRR17053201 TRUE 17476078 6174919 10961541 339618 64.67 10391.96
|
22 |
+
SRP348188 SRR17053202 TRUE 18100889 6073128 11696395 331366 66.45 10153.29
|
23 |
+
SRP348188 SRR17053203 TRUE 18377008 5804790 12237970 334248 68.41 7611.952
|
24 |
+
SRP348188 SRR17053204 TRUE 16548332 5428876 10844409 275047 67.19 9056.939
|
25 |
+
SRP348188 SRR17053205 TRUE 17275415 5810364 11096492 368559 66.37 9157.659
|
26 |
+
SRP348188 SRR17053206 TRUE 18519724 6051741 12158288 309695 67.32 9271.599
|
27 |
+
SRP348188 SRR17053207 TRUE 15273963 5568045 9470402 235516 63.55 6623.831
|
28 |
+
SRP348188 SRR17053208 TRUE 17616135 5671543 11642203 302389 67.8 8322.636
|
29 |
+
SRP351386 SRR17263545 FALSE 29346278 26305375 122706 2918197 10.36 8027.931
|
30 |
+
SRP351386 SRR17263546 FALSE 44975062 40913868 176037 3885157 9.03 12174.49
|
31 |
+
SRP351386 SRR17263547 FALSE 42702844 39054602 169912 3478330 8.54 9595.093
|
32 |
+
SRP351386 SRR17263548 FALSE 53628660 48375232 108014 5145414 9.8 13298.06
|
33 |
+
SRP351386 SRR17263549 FALSE 42964484 38128961 149919 4685604 11.25 14477.92
|
34 |
+
SRP351386 SRR17263550 FALSE 204791630 184729124 632215 19430291 9.8 44978.05
|
35 |
+
SRP351386 SRR17263551 FALSE 176241646 156921999 441882 18877765 10.96 52013.12
|
36 |
+
SRP351386 SRR17263553 FALSE 69016787 63102003 198545 5716239 8.57 13490.4
|
37 |
+
SRP351386 SRR17263554 FALSE 85398575 72030283 388979 12979313 15.65 34942.36
|
38 |
+
SRP351386 SRR17263555 FALSE 102283896 94842502 271673 7169721 7.28 20530.6
|
39 |
+
SRP366762 SRR18548918 TRUE 42241748 15636639 25693548 911561 62.98 8507.195
|
40 |
+
SRP366762 SRR18548919 TRUE 41996026 17444588 23728707 822731 58.46 8487.22
|
41 |
+
SRP366762 SRR18548920 TRUE 43144922 22121519 20421497 601906 48.73 7873.261
|
42 |
+
SRP366762 SRR18548921 TRUE 42170820 22724204 18898150 548466 46.11 8056.515
|
43 |
+
SRP366762 SRR18548922 TRUE 41974840 20331940 21030049 612851 51.56 8123.555
|
44 |
+
SRP366762 SRR18548923 TRUE 42147432 22261281 19317726 568425 47.18 7462.181
|
45 |
+
SRP366762 SRR18548924 TRUE 43528606 15461862 27098895 967849 64.48 8544.081
|
46 |
+
SRP366762 SRR18548925 TRUE 42071392 20405689 20923452 742251 51.5 7880.629
|
47 |
+
SRP366762 SRR18548926 TRUE 42291642 16916426 24484220 890996 60 8121.445
|
48 |
+
SRP366762 SRR18548927 TRUE 43438968 18163227 24391732 884009 58.19 8890.078
|
49 |
+
SRP366762 SRR18548928 TRUE 42103378 16588476 24618008 896894 60.6 8659.984
|
50 |
+
SRP366762 SRR18548929 TRUE 43373470 29823221 13120168 430081 31.24 7195.889
|
51 |
+
SRP366762 SRR18548930 TRUE 41962116 30450235 11142178 369703 27.43 6578.758
|
52 |
+
SRP366762 SRR18548931 TRUE 43484992 29251555 13773490 459947 32.73 7180.522
|
53 |
+
SRP366762 SRR18548932 TRUE 42216052 28850270 12941918 423864 31.66 6825.339
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146 |
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SRP418887 SRR23205055 TRUE NA NA NA NA NA NA
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SRP419305 SRR23248156 TRUE NA NA NA NA NA NA
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SRP419305 SRR23248158 TRUE NA NA NA NA NA NA
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191 |
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SRP419400 SRR23254204 TRUE NA NA NA NA NA NA
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SRP419400 SRR23254207 TRUE NA NA NA NA NA NA
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SRP419400 SRR23254209 TRUE NA NA NA NA NA NA
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199 |
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200 |
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201 |
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202 |
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203 |
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SRP419400 SRR23254217 TRUE NA NA NA NA NA NA
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207 |
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208 |
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209 |
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SRP419410 SRR23254429 TRUE NA NA NA NA NA NA
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212 |
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213 |
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214 |
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215 |
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216 |
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219 |
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220 |
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221 |
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SRP419410 SRR23254440 TRUE NA NA NA NA NA NA
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223 |
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224 |
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225 |
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226 |
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SRP419410 SRR23254445 TRUE 58899546 30317672 25727792 2854082 48.53 44546.98
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227 |
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228 |
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229 |
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230 |
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SRP419410 SRR23254449 TRUE 33770457 20492023 12608080 670354 39.32 16569.32
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231 |
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SRP419410 SRR23254450 TRUE 41044328 24811398 15381192 851738 39.55 19011.39
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SRP421678 SRR23381531 TRUE NA NA NA NA NA NA
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SRP421678 SRR23381534 TRUE NA NA NA NA NA NA
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SRP421678 SRR23381535 TRUE 161421566 61971928 95262503 4187135 61.61 31704
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237 |
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240 |
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241 |
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250 |
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251 |
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252 |
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SRP045423 SRR1542930 FALSE 41089401 29994501 10019132 1075768 27 6921.485
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856 |
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DRP010761 DRR512209 FALSE 17827794 13729758 3925464 172572 22.99 912.44
|
857 |
+
DRP010761 DRR512210 FALSE 23914125 18824120 4883797 206208 21.28 1188.781
|
858 |
+
DRP010761 DRR512211 FALSE 16898566 15359143 1476792 62631 9.11 846.585
|
859 |
+
DRP010761 DRR512212 FALSE 22343673 20284278 1975618 83777 9.22 1090.782
|
860 |
+
DRP010761 DRR512213 FALSE 23144474 21150029 1911753 82692 8.62 1177.087
|
861 |
+
DRP010761 DRR512214 FALSE 20652663 19350916 1242389 59358 6.3 991.561
|
862 |
+
DRP010761 DRR512215 FALSE 22672838 21345440 1264367 63031 5.85 1139.795
|
863 |
+
DRP010761 DRR512216 FALSE 22716909 21209009 1440944 66956 6.64 1167.441
|
864 |
+
DRP010761 DRR512217 FALSE 25957191 18514865 6585710 856616 28.67 2153.79
|
865 |
+
DRP010761 DRR512218 FALSE 17829136 12854681 4475978 498477 27.9 1889.802
|
866 |
+
DRP010761 DRR512219 FALSE 28466597 21028535 6320263 1117799 26.13 3784.309
|
867 |
+
DRP010761 DRR512220 FALSE 14881212 11955620 2786094 139498 19.66 903.136
|
868 |
+
DRP010761 DRR512221 FALSE 16479526 13197041 3114331 168154 19.92 934.822
|
869 |
+
DRP010761 DRR512222 FALSE 11284221 9193956 1994676 95589 18.52 605.2
|
870 |
+
DRP010761 DRR512223 FALSE 18172027 16558916 1525827 87284 8.88 885.874
|
871 |
+
DRP010761 DRR512224 FALSE 4571460 4127172 422920 21368 9.72 250.008
|
872 |
+
DRP010761 DRR512225 FALSE 20119900 18184896 1845769 89235 9.62 955.35
|
873 |
+
DRP010761 DRR512226 FALSE 25357613 24368204 939063 50346 3.9 1065.578
|
874 |
+
DRP010761 DRR512227 FALSE 21236059 20414798 778428 42833 3.87 964.447
|
875 |
+
DRP010761 DRR512228 FALSE 17502777 16742432 722104 38241 4.34 760.12
|
876 |
+
DRP010761 DRR512229 FALSE 26789094 24404339 2212765 171990 8.9 1227.065
|
877 |
+
DRP010761 DRR512230 FALSE 9221039 8374130 799952 46957 9.18 476.786
|
878 |
+
DRP010761 DRR512231 FALSE 23673437 21623727 1869320 180390 8.66 1265.738
|
879 |
+
DRP010761 DRR512232 FALSE 16202104 14788963 1340586 72555 8.72 847.975
|
880 |
+
DRP010761 DRR512233 FALSE 20684288 18920815 1690521 72952 8.53 1085.875
|
881 |
+
DRP010761 DRR512234 FALSE 16210894 14827987 1314202 68705 8.53 889.63
|
882 |
+
DRP010761 DRR512235 FALSE 14470966 13594982 835120 40864 6.05 722.481
|
883 |
+
DRP010761 DRR512236 FALSE 12969200 12297119 640205 31876 5.18 633.064
|
884 |
+
DRP010761 DRR512237 FALSE 21388570 20065676 1261345 61549 6.19 996.8
|
885 |
+
DRP010761 DRR512238 FALSE 10670175 8403558 2170979 95638 21.24 666.373
|
886 |
+
DRP010761 DRR512239 FALSE 9941602 7808146 2044577 88879 21.46 627.005
|
887 |
+
DRP010761 DRR512240 FALSE 51080516 40921034 9741223 418259 19.89 2891.165
|
888 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz1_R1_001 NA 33480078 26068592 7132931 278555 22.14 NA
|
889 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz1_R2_001 NA 33480078 26112299 7095427 272352 22.01 NA
|
890 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz2_R1_001 NA 38484850 29995602 8168961 320287 22.06 NA
|
891 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz2_R2_001 NA 38484850 30024325 8145332 315193 21.98 NA
|
892 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz3_R1_001 NA 38294180 29870619 8059792 363769 22 NA
|
893 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Bz3_R2_001 NA 38294180 29901528 8034806 357846 21.92 NA
|
894 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz1_R1_001 NA 44832239 11552411 32044143 1235685 74.23 NA
|
895 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz1_R2_001 NA 44832239 11707325 31912274 1212640 73.89 NA
|
896 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz2_R1_001 NA 43027075 10924648 30894677 1207750 74.61 NA
|
897 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz2_R2_001 NA 43027075 11080508 30759739 1186828 74.25 NA
|
898 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz3_R1_001 NA 50593536 12411941 36775556 1406039 75.47 NA
|
899 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-HA_Tz3_R2_001 NA 50593536 12592526 36622251 1378759 75.11 NA
|
900 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz1_R1_001 NA 38449586 29496589 8579330 373667 23.29 NA
|
901 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz1_R2_001 NA 38449586 29528543 8552207 368836 23.2 NA
|
902 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz2_R1_001 NA 39084917 29908530 8809092 367295 23.48 NA
|
903 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz2_R2_001 NA 39084917 29952503 8770805 361609 23.37 NA
|
904 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz3_R1_001 NA 43057955 32893483 9749591 414881 23.61 NA
|
905 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Bz3_R2_001 NA 43057955 32941018 9707618 409319 23.5 NA
|
906 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz1_R1_001 NA 38498988 12188118 25329930 980940 68.34 NA
|
907 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz1_R2_001 NA 38498988 12354861 25184051 960076 67.91 NA
|
908 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz2_R1_001 NA 39908111 12916418 25979651 1012042 67.63 NA
|
909 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz2_R2_001 NA 39908111 13038469 25874144 995498 67.33 NA
|
910 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz3_R1_001 NA 39491493 12907695 25571474 1012324 67.32 NA
|
911 |
+
Pru_GCN5A_Tz-Bz_RNAseq Pru_GCN5A-KO_Tz3_R2_001 NA 39491493 13016289 25480311 994893 67.04 NA
|
data/estimated_expression.parquet
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networks/blastp_network.parquet
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networks/coexp_network.parquet
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top_coexp_hits.tsv
ADDED
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|
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version https://git-lfs.github.com/spec/v1
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