Increase PCRE version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase ATLAS version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Do not compile ATLAS with obsolete GNU Fortran option

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase HDF5 library version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase VIGRA version

The old one can no longer be compiled with GNU C++.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase PyQt-x11 version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Fix Qt download

Nokia is not in Microsoft's iron grip, so OpenSource is evil (and
they don't do evil).

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase SIP version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Work around ilastik's download being invalid while generating archives

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase matplotlib version

The old one no longer builds here.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase decorator version

The old one is no longer available.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Increase MySQL version

The old one is no longer available. And the URL is dead, anyway.

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
git clean requires -n or -f

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Make sure that the javabridge is built

Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
TOUNDO

Seems that wxPython cannot find that modern Ubuntu has libGL in
/usr/lib/x86_64-linux-gnu/...