MC16s: Run chimera slaying after orientation
MC16s: add test build factory
MC16s: mv classify into build dir; test for just classify
MC16s: MC16s: mv orient into build dir; test for just orient
MC16s: add oriented qual file to test
MC16s: add oriented qual file to test
MC16s: mv detect and rm chimeras into build dir; test for just detect and rm chimeras
MC16s: move calling sanger process inst data into event; update test
MC16s: classify and orient test call cmd instead of build method
MC16s: update test and name for ddetect and rm chimeras
SX: add config conversion to Functions module; Reader and writer use them
SX Result: add output file config for more output options
MC16s: mv processsanger inst data to build dir
MC16s: update class name for process sanger inst data
MC16s: add process inst data command to build
MC16s: update prepare/process inst data to call execute on process sanger inst data cmd
MC16s: rename process_inst... to exectue in snager process inst data; sanger test uses generic prepare inst data
SX: add defined check in config_to_hash
MC16s: add basename_for method to amplicon set
SX: rm white space from writer