Corrected command line arguments from the copied kineticsGroups

The methods available are the only major difference between the
transition state and kinetics.
Adding some transition state training data.
Trained groups from the added data.
Add some training data for H radical reactions.
Trained groups from the most recently added training data.

Had to cheat to get these, as the uncertainty estimation failed
for some groups. Therefore the uncertainties for these trained
groups are off.
Simplifying indices of the training set
Additional training data for H abstraction reactions.

Specifically reactions involving H radicals abstracting the
hydrogen atom.
Distance data trained from the added H abstraction saddle points.

Uncertainty analysis is given trouble, so didn't calculate those.
That needs some work.
H abstraction ts training data.
Retrained H Abstraction ts distance group values.
Group values at B3LYP/6-31+G(d,p).
Retrained B3LYP groups with uncertainties.

Same training set, so the group values should be the same.
Added the reverse reactions to the training set.
Retrained the groups to include the reverse reactions.

Uncertainties have also been included in these calculations.
These have been documented in a corresponding RMG-Py commit.
Fixed some uncertainties that should have been blank (and tweaked longDesc comment)