Tidy up and make callable from MultiFit application.


git-svn-id: https://svn.salilab.org/imp/trunk@16130 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
--version now also shows program name.


git-svn-id: https://svn.salilab.org/imp/trunk@16131 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Top-level integrative docking application; parse and check command line options.


git-svn-id: https://svn.salilab.org/imp/trunk@16132 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Do PatchDock docking.


git-svn-id: https://svn.salilab.org/imp/trunk@16133 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Update for new show() output.


git-svn-id: https://svn.salilab.org/imp/trunk@16135 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Raise proper exception.


git-svn-id: https://svn.salilab.org/imp/trunk@16136 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
gperftools is now optionally linked into base, not benchmark.


git-svn-id: https://svn.salilab.org/imp/trunk@16137 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Complete docking step.


git-svn-id: https://svn.salilab.org/imp/trunk@16138 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
Remove unused functions.


git-svn-id: https://svn.salilab.org/imp/trunk@16140 e91f8c7b-0e32-4433-a9ac-4502d39a4eab
fix test tfailures

git-svn-id: https://svn.salilab.org/imp/trunk@16141 e91f8c7b-0e32-4433-a9ac-4502d39a4eab