first commit
edited readme
edited readme
added ref scripts, changed readme
removed files
removed more extraneous files ...
added TODO to RSEM_SCRIPTS/rsem_each_library.sh
added two RSEM scripts
updated call_snps_on_this.sh
write epitaph for call_variants.sh
added boss man's trinotate script
added useless fastq script
edited that useless fastq script
added some amazing new awk scripts for snp filtering
deleted some junk, updated snp_pipe_setup.sh
cleaned up extract_fastq_seqs_from_list.awk
hit up some TODOs in SNP_SCRIPTS, deleted some junk
updated rsem_each_library.sh
reorganized; fixed find_duplicate_gene_ids.awk; deleted unnecessary stuff.
added some pretty dope fastq python scripts