update de_glm runner to new standards
update de_pairwise runner to new standards
update km_livedemo runner to new standards
update km_pipeline_noqc runner to new standards
move km_pipeline_noqc to km_subread_noqc, in line with other pipeline names
update km_subjunc runner to new standards
update km_subread runner to new standards
update km_tophat runner to new standards
update make_igv_bams runner to new standards
update rob_pl runner to new standards
update pete_277_pipeline runner to new standards