Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/SciLifeLab/scilifelab into develop
Merge branch 'develop' of https://github.com/mayabrandi/scilifelab into develop
Fix conflict
Merge branch 'develop' of https://github.com/mayabrandi/scilifelab into develop
Maya conflict
Merge pull request #201 from brainstorm/master

Weekly develop-->master merge
fixed indentation, genome build is not modified if application is unknown
fixed error in passing parameters
Merge pull request #203 from b97pla/hotfix/fix_indentation

HOTFIX: fix indentation error
corrected trim() call, removed misplaced lower() call
refactored configuration
corrected case of de novo
fixed samll bug
Merge pull request #205 from b97pla/hotfix/fix_bug_in_configuration_setup

HOTFIX: corrected bug in string manipulations