That's right.  Just `if(debug)` should work if you specify `-debugKmers ""`.

--
Jake Biesinger
Graduate Student
Xie Lab, UC Irvine


On Mon, Oct 28, 2013 at 8:49 AM, anbangx <notifications@github.com> wrote:

> In
> genomix/genomix-pregelix/src/main/java/edu/uci/ics/genomix/pregelix/operator/DeBruijnGraphCleanVertex.java:
>
> > @@ -90,6 +90,7 @@ public void checkDebug() {
> >          }
> >
> >          verbose = false;
> > +        verbose |= debug;
>
> Right. So if it is for debug purpose and trying to trace each vertex, we
> can directly use if(debug). Correct?
>
> —
> Reply to this email directly or view it on GitHub<https://github.com/uci-cbcl/genomix/pull/40/files#r7252255>
> .
>