Hugging Face's logo

Datasets:
ibm
/
otter_dude

ArXiv:
License:
Dataset card Files Community
otter_dude / README.md
marmg's picture
marmg
Update README.md
9f8efac
preview code
|
raw
history blame contribute delete
1.32 kB
metadata
license: mit

Otter DUDe Dataset Card

Otter DUDe includes 1,452,568 instances of drug-target interactions.

Dataset details

DUDe

DUDe comprises a collection of 22,886 active compounds and their corresponding affinities towards 102 targets. For our study, we utilized a preprocessed version of the DUDe, which includes 1,452,568 instances of drug-target interactions. To prevent any data leakage, we eliminated the negative interactions and the overlapping triples with the TDC DTI dataset. As a result, we were left with a total of 40,216 drug-target interaction pairs.

Original dataset:

  • Citation: Samuel Sledzieski, Rohit Singh, Lenore Cowen, and Bonnie Berger. Adapting protein language models for rapid dti prediction. bioRxiv, pages 2022–11, 2022

Paper or resources for more information:

License:

MIT

Where to send questions or comments about the dataset:

Models trained on Otter UBC