private void setNodekeyInJsonResponse(String service) throws Exception { String filename = this.baseDirectory + service + ".json"; Scanner s = new Scanner(new File(filename)); PrintWriter fw = new PrintWriter(new File(filename + ".new")); while (s.hasNextLine()) { fw.println(s.nextLine().replaceAll("NODEKEY", this.key)); } s.close(); fw.close(); (new File(filename + ".new")).renameTo(new File(filename)); }

public void transform(String style, String spec, OutputStream out) throws IOException { URL url = new URL(rootURL, spec); InputStream in = new PatchXMLSymbolsStream(new StripDoctypeStream(url.openStream())); transform(style, in, out); in.close(); }

public static void test(String args[]) { int trace; int bytes_read = 0; int last_contentLenght = 0; try { BufferedReader reader; URL url; url = new URL(args[0]); URLConnection istream = url.openConnection(); last_contentLenght = istream.getContentLength(); reader = new BufferedReader(new InputStreamReader(istream.getInputStream())); System.out.println(url.toString()); String line; trace = t2pNewTrace(); while ((line = reader.readLine()) != null) { bytes_read = bytes_read + line.length() + 1; t2pProcessLine(trace, line); } t2pHandleEventPairs(trace); t2pSort(trace, 0); t2pExportTrace(trace, new String("pngtest2.png"), 1000, 700, (float) 0, (float) 33); t2pExportTrace(trace, new String("pngtest3.png"), 1000, 700, (float) 2.3, (float) 2.44); System.out.println("Press any key to contiune read from stream !!!"); System.out.println(t2pGetProcessName(trace, 0)); System.in.read(); istream = url.openConnection(); if (last_contentLenght != istream.getContentLength()) { istream = url.openConnection(); istream.setRequestProperty("Range", "bytes=" + Integer.toString(bytes_read) + "-"); System.out.println(Integer.toString(istream.getContentLength())); reader = new BufferedReader(new InputStreamReader(istream.getInputStream())); while ((line = reader.readLine()) != null) { System.out.println(line); t2pProcessLine(trace, line); } } else System.out.println("File not changed !"); t2pDeleteTrace(trace); } catch (MalformedURLException e) { System.out.println("MalformedURLException !!!"); } catch (IOException e) { System.out.println("File not found " + args[0]); } ; }

private static String loadUrlToString(String a_url) throws IOException { URL l_url1 = new URL(a_url); BufferedReader br = new BufferedReader(new InputStreamReader(l_url1.openStream())); String l_content = ""; String l_ligne = null; l_content = br.readLine(); while ((l_ligne = br.readLine()) != null) { l_content += AA.SL + l_ligne; } return l_content; }

public String kodetu(String testusoila) { MessageDigest md = null; try { md = MessageDigest.getInstance("SHA"); md.update(testusoila.getBytes("UTF-8")); } catch (NoSuchAlgorithmException e) { new MezuLeiho("Ez da zifraketa algoritmoa aurkitu", "Ados", "Zifraketa Arazoa", JOptionPane.ERROR_MESSAGE); e.printStackTrace(); } catch (UnsupportedEncodingException e) { new MezuLeiho("Errorea kodetzerakoan", "Ados", "Kodeketa Errorea", JOptionPane.ERROR_MESSAGE); e.printStackTrace(); } byte raw[] = md.digest(); String hash = (new BASE64Encoder()).encode(raw); return hash; }

private StringBuffer encoder(String arg) { if (arg == null) { arg = ""; } MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); md5.update(arg.getBytes(SysConstant.charset)); } catch (Exception e) { e.printStackTrace(); } return toHex(md5.digest()); }

public static void printResponseHeaders(String address) { logger.info("Address: " + address); try { URL url = new URL(address); URLConnection conn = url.openConnection(); for (int i = 0; ; i++) { String headerName = conn.getHeaderFieldKey(i); String headerValue = conn.getHeaderField(i); if (headerName == null && headerValue == null) { break; } if (headerName == null) { logger.info(headerValue); continue; } logger.info(headerName + " " + headerValue); } } catch (Exception e) { logger.error("Exception Message: " + e.getMessage()); } }

public static String getEncodedPassword(String buff) { if (buff == null) return null; String t = new String(); try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(buff.getBytes()); byte[] r = md.digest(); for (int i = 0; i < r.length; i++) { t += toHexString(r[i]); } } catch (Exception e) { e.printStackTrace(); } return t; }

public void load(String fileName) { BufferedReader bufReader; loaded = false; vector.removeAllElements(); try { if (fileName.startsWith("http:")) { URL url = new URL(fileName); bufReader = new BufferedReader(new InputStreamReader(url.openStream())); } else bufReader = new BufferedReader(new FileReader(fileName)); String inputLine; while ((inputLine = bufReader.readLine()) != null) { if (listener != null) listener.handleLine(inputLine); else vector.add(inputLine); } bufReader.close(); loaded = true; } catch (IOException e) { errorMsg = e.getMessage(); } }

private static void copyFile(File sourceFile, File destFile) { try { if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; try { source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); destination.transferFrom(source, 0, source.size()); } finally { if (source != null) { source.close(); } if (destination != null) { destination.close(); } } } catch (Exception e) { throw new RuntimeException(e); } }

private MapProperties readProperties(URL url) { @SuppressWarnings("unchecked") MapProperties properties = new MapProperties(new LinkedHashMap()); InputStream is = null; try { is = url.openStream(); properties.load(is); } catch (IOException ex) { throw new RuntimeException(ex); } finally { StreamUtils.close(is); } return properties; }

public String tranportRemoteUnitToLocalTempFile(String urlStr) throws UnitTransportException { InputStream input = null; BufferedOutputStream bos = null; File tempUnit = null; try { URL url = null; int total = 0; try { url = new URL(urlStr); input = url.openStream(); URLConnection urlConnection; urlConnection = url.openConnection(); total = urlConnection.getContentLength(); } catch (IOException e) { throw new UnitTransportException(String.format("Can't get remote file [%s].", urlStr), e); } String unitName = urlStr.substring(urlStr.lastIndexOf('/') + 1); tempUnit = null; try { if (StringUtils.isNotEmpty(unitName)) tempUnit = new File(CommonUtil.getTempDir(), unitName); else tempUnit = File.createTempFile(CommonUtil.getTempDir(), "tempUnit"); File parent = tempUnit.getParentFile(); FileUtils.forceMkdir(parent); if (!tempUnit.exists()) FileUtils.touch(tempUnit); bos = new BufferedOutputStream(new FileOutputStream(tempUnit)); } catch (FileNotFoundException e) { throw new UnitTransportException(String.format("Can't find temp file [%s].", tempUnit.getAbsolutePath()), e); } catch (IOException e) { throw new UnitTransportException(String.format("Can't create temp file [%s].", tempUnit.getAbsolutePath()), e); } catch (DeployToolException e) { throw new UnitTransportException(String.format("Error when create temp file [%s].", tempUnit), e); } logger.info(String.format("Use [%s] for http unit [%s].", tempUnit.getAbsoluteFile(), urlStr)); int size = -1; try { size = IOUtils.copy(input, bos); bos.flush(); } catch (IOException e) { logger.info(String.format("Error when download [%s] to [%s].", urlStr, tempUnit)); } if (size != total) throw new UnitTransportException(String.format("The file size is not right when download http unit [%s]", urlStr)); } finally { if (input != null) IOUtils.closeQuietly(input); if (bos != null) IOUtils.closeQuietly(bos); } logger.info(String.format("Download unit to [%s].", tempUnit.getAbsolutePath())); return tempUnit.getAbsolutePath(); }

protected void doRestoreOrganize() throws Exception { Connection con = null; PreparedStatement ps = null; ResultSet result = null; String strDelQuery = "DELETE FROM " + Common.ORGANIZE_TABLE; String strSelQuery = "SELECT organize_id,organize_type_id,organize_name,organize_manager," + "organize_describe,work_type,show_order,position_x,position_y " + "FROM " + Common.ORGANIZE_B_TABLE + " " + "WHERE version_no = ?"; String strInsQuery = "INSERT INTO " + Common.ORGANIZE_TABLE + " " + "(organize_id,organize_type_id,organize_name,organize_manager," + "organize_describe,work_type,show_order,position_x,position_y) " + "VALUES (?,?,?,?,?,?,?,?,?)"; DBOperation dbo = factory.createDBOperation(POOL_NAME); try { try { con = dbo.getConnection(); con.setAutoCommit(false); ps = con.prepareStatement(strDelQuery); ps.executeUpdate(); ps = con.prepareStatement(strSelQuery); ps.setInt(1, this.versionNO); result = ps.executeQuery(); ps = con.prepareStatement(strInsQuery); while (result.next()) { ps.setString(1, result.getString("organize_id")); ps.setString(2, result.getString("organize_type_id")); ps.setString(3, result.getString("organize_name")); ps.setString(4, result.getString("organize_manager")); ps.setString(5, result.getString("organize_describe")); ps.setString(6, result.getString("work_type")); ps.setInt(7, result.getInt("show_order")); ps.setInt(8, result.getInt("position_x")); ps.setInt(9, result.getInt("position_y")); int resultCount = ps.executeUpdate(); if (resultCount != 1) { con.rollback(); throw new CesSystemException("Organize_backup.doRestoreOrganize(): ERROR Inserting data " + "in T_SYS_ORGANIZE INSERT !! resultCount = " + resultCount); } } con.commit(); } catch (SQLException se) { con.rollback(); throw new CesSystemException("Organize_backup.doRestoreOrganize(): SQLException: " + se); } finally { con.setAutoCommit(true); close(dbo, ps, result); } } catch (SQLException se) { throw new CesSystemException("Organize_backup.doRestoreOrganize(): SQLException while committing or rollback"); } }

static String encodeEmailAsUserId(String email) { try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(email.toLowerCase().getBytes()); StringBuilder builder = new StringBuilder(); builder.append("1"); for (byte b : md5.digest()) { builder.append(String.format("%02d", new Object[] { Integer.valueOf(b & 0xFF) })); } return builder.toString().substring(0, 20); } catch (NoSuchAlgorithmException ex) { } return ""; }

private String sha1(String s) { String encrypt = s; try { MessageDigest sha = MessageDigest.getInstance("SHA-1"); sha.update(s.getBytes()); byte[] digest = sha.digest(); final StringBuffer buffer = new StringBuffer(); for (int i = 0; i < digest.length; ++i) { final byte b = digest[i]; final int value = (b & 0x7F) + (b < 0 ? 128 : 0); buffer.append(value < 16 ? "0" : ""); buffer.append(Integer.toHexString(value)); } encrypt = buffer.toString(); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } return encrypt; }

@SuppressWarnings("unused") private String getMD5(String value) { MessageDigest md5; try { md5 = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { return ""; } md5.reset(); md5.update(value.getBytes()); byte[] messageDigest = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < messageDigest.length; i++) { hexString.append(Integer.toHexString(0xFF & messageDigest[i])); } String hashedPassword = hexString.toString(); return hashedPassword; }

private void storeFieldMap(WorkingContent c, Connection conn) throws SQLException { SQLDialect dialect = getDatabase().getSQLDialect(); if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(false); } try { Object thisKey = c.getPrimaryKey(); deleteFieldContent(thisKey, conn); PreparedStatement ps = null; StructureItem nextItem; Map fieldMap = c.getFieldMap(); String type; Object value, siKey; for (Iterator i = c.getStructure().getStructureItems().iterator(); i.hasNext(); ) { nextItem = (StructureItem) i.next(); type = nextItem.getDataType().toUpperCase(); siKey = nextItem.getPrimaryKey(); value = fieldMap.get(nextItem.getName()); try { if (type.equals(StructureItem.DATE)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_DATE_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); dialect.setDate(ps, 3, (Date) value); ps.executeUpdate(); } else if (type.equals(StructureItem.INT) || type.equals(StructureItem.FLOAT) || type.equals(StructureItem.VARCHAR)) { ps = conn.prepareStatement(sqlConstants.get("INSERT_" + type + "_FIELD")); ps.setObject(1, thisKey); ps.setObject(2, siKey); if (value != null) { ps.setObject(3, value); } else { int sqlType = Types.INTEGER; if (type.equals(StructureItem.FLOAT)) { sqlType = Types.FLOAT; } else if (type.equals(StructureItem.VARCHAR)) { sqlType = Types.VARCHAR; } ps.setNull(3, sqlType); } ps.executeUpdate(); } else if (type.equals(StructureItem.TEXT)) { setTextField(c, siKey, (String) value, conn); } if (ps != null) { ps.close(); ps = null; } } finally { if (ps != null) ps.close(); } } if (TRANSACTIONS_ENABLED) { conn.commit(); } } catch (SQLException e) { if (TRANSACTIONS_ENABLED) { conn.rollback(); } throw e; } finally { if (TRANSACTIONS_ENABLED) { conn.setAutoCommit(true); } } }

public void elimina(Pedido pe) throws errorSQL, errorConexionBD { System.out.println("GestorPedido.elimina()"); int id = pe.getId(); String sql; Statement stmt = null; try { gd.begin(); sql = "DELETE FROM pedido WHERE id=" + id; System.out.println("Ejecutando: " + sql); stmt = gd.getConexion().createStatement(); stmt.executeUpdate(sql); System.out.println("executeUpdate"); gd.commit(); System.out.println("commit"); stmt.close(); } catch (SQLException e) { gd.rollback(); throw new errorSQL(e.toString()); } catch (errorConexionBD e) { System.err.println("Error en GestorPedido.elimina(): " + e); } catch (errorSQL e) { System.err.println("Error en GestorPedido.elimina(): " + e); } }

public InlineImageChunk(URL url) { super(); this.url = url; try { URLConnection urlConn = url.openConnection(); urlConn.setReadTimeout(15000); ImageInputStream iis = ImageIO.createImageInputStream(urlConn.getInputStream()); Iterator<ImageReader> readers = ImageIO.getImageReaders(iis); if (readers.hasNext()) { ImageReader reader = readers.next(); reader.setInput(iis, true); this.width = reader.getWidth(0); this.ascent = reader.getHeight(0); this.descent = 0; reader.dispose(); } else System.err.println("cannot read width and height of image " + url + " - no suitable reader!"); } catch (Exception exc) { System.err.println("cannot read width and height of image " + url + " due to exception:"); System.err.println(exc); exc.printStackTrace(System.err); } }

void execute(Connection conn, Component parent, String context, final ProgressMonitor progressMonitor, ProgressWrapper progressWrapper) throws Exception { int noOfComponents = m_components.length; Statement statement = null; StringBuffer pmNoteBuf = new StringBuffer(m_update ? "Updating " : "Creating "); pmNoteBuf.append(m_itemNameAbbrev); pmNoteBuf.append(" "); pmNoteBuf.append(m_itemNameValue); final String pmNote = pmNoteBuf.toString(); progressMonitor.setNote(pmNote); try { conn.setAutoCommit(false); int id = -1; if (m_update) { statement = conn.createStatement(); String sql = getUpdateSql(noOfComponents, m_id); statement.executeUpdate(sql); id = m_id; if (m_indexesChanged) deleteComponents(conn, id); } else { PreparedStatement pStmt = getInsertPrepStmt(conn, noOfComponents); pStmt.executeUpdate(); Integer res = DbCommon.getAutoGenId(parent, context, pStmt); if (res == null) return; id = res.intValue(); } if (!m_update || m_indexesChanged) { PreparedStatement insertCompPrepStmt = conn.prepareStatement(getInsertComponentPrepStmtSql()); for (int i = 0; i < noOfComponents; i++) { createComponent(progressMonitor, m_components, pmNote, id, i, insertCompPrepStmt); } } conn.commit(); m_itemTable.getPrimaryId().setVal(m_item, id); m_itemCache.updateCache(m_item, id); } catch (SQLException ex) { try { conn.rollback(); } catch (SQLException e) { e.printStackTrace(); } throw ex; } finally { if (statement != null) { statement.close(); } } }

private static void main(String[] args) { try { File f = new File("test.txt"); if (f.exists()) { throw new IOException(f + " already exists. I don't want to overwrite it."); } StraightStreamReader in; char[] cbuf = new char[0x1000]; int read; int totRead; FileOutputStream out = new FileOutputStream(f); for (int i = 0x00; i < 0x100; i++) { out.write(i); } out.close(); in = new StraightStreamReader(new FileInputStream(f)); for (int i = 0x00; i < 0x100; i++) { read = in.read(); if (read != i) { System.err.println("Error: " + i + " read as " + read); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = in.read(cbuf); if (totRead != 0x100) { System.err.println("Simple buffered read did not read the full amount: 0x" + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 0x100 - totRead)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); in = new StraightStreamReader(new FileInputStream(f)); totRead = 0; while (totRead <= 0x100 && (read = in.read(cbuf, totRead + 0x123, 7)) > 0) { totRead += read; } if (totRead != 0x100) { System.err.println("Not enough read. Bytes read: " + Integer.toHexString(totRead)); } for (int i = 0x00; i < totRead; i++) { if (cbuf[i + 0x123] != i) { System.err.println("Error: 0x" + i + " read as 0x" + cbuf[i + 0x123]); } } in.close(); f.delete(); } catch (IOException x) { System.err.println(x.getMessage()); } }

public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } }

public List<SuspectFileProcessingStatus> retrieve() throws Exception { BufferedOutputStream bos = null; try { String listFilePath = GeneralUtils.generateAbsolutePath(getDownloadDirectoryPath(), getListName(), "/"); listFilePath = listFilePath.concat(".xml"); if (!new File(getDownloadDirectoryPath()).exists()) { FileUtils.forceMkdir(new File(getDownloadDirectoryPath())); } FileOutputStream listFileOutputStream = new FileOutputStream(listFilePath); bos = new BufferedOutputStream(listFileOutputStream); InputStream is = null; if (getUseProxy()) { is = URLUtils.getResponse(getUrl(), getUserName(), getPassword(), URLUtils.HTTP_GET_METHOD, getProxyHost(), getProxyPort()); IOUtils.copyLarge(is, bos); } else { URLUtils.getResponse(getUrl(), getUserName(), getPassword(), bos, null); } bos.flush(); bos.close(); File listFile = new File(listFilePath); if (!listFile.exists()) { throw new IllegalStateException("The list file did not get created"); } if (isLoggingInfo()) { logInfo("Downloaded list file : " + listFile); } List<SuspectFileProcessingStatus> sfpsList = new ArrayList<SuspectFileProcessingStatus>(); String loadType = GeneralConstants.LOAD_TYPE_FULL; String feedType = GeneralConstants.EMPTY_TOKEN; String listName = getListName(); String errorCode = ""; String description = ""; SuspectFileProcessingStatus sfps = getSuspectsLoaderService().storeFileIntoListIncomingDir(listFile, loadType, feedType, listName, errorCode, description); sfpsList.add(sfps); if (isLoggingInfo()) { logInfo("Retrieved list file with SuspectFileProcessingStatus: " + sfps); } return sfpsList; } finally { if (null != bos) { bos.close(); } } }

void shutdown(final boolean unexpected) { if (unexpected) { log.warn("S H U T D O W N --- received unexpected shutdown request."); } else { log.info("S H U T D O W N --- start regular shutdown."); } if (this.uncaughtException != null) { log.warn("Shutdown probably caused by the following Exception.", this.uncaughtException); } log.error("check if we need the controler listener infrastructure"); if (this.dumpDataAtEnd) { new PopulationWriter(this.population, this.network).write(this.controlerIO.getOutputFilename(FILENAME_POPULATION)); new NetworkWriter(this.network).write(this.controlerIO.getOutputFilename(FILENAME_NETWORK)); new ConfigWriter(this.config).write(this.controlerIO.getOutputFilename(FILENAME_CONFIG)); if (!unexpected && this.getConfig().vspExperimental().isWritingOutputEvents()) { File toFile = new File(this.controlerIO.getOutputFilename("output_events.xml.gz")); File fromFile = new File(this.controlerIO.getIterationFilename(this.getLastIteration(), "events.xml.gz")); IOUtils.copyFile(fromFile, toFile); } } if (unexpected) { log.info("S H U T D O W N --- unexpected shutdown request completed."); } else { log.info("S H U T D O W N --- regular shutdown completed."); } try { Runtime.getRuntime().removeShutdownHook(this.shutdownHook); } catch (IllegalStateException e) { log.info("Cannot remove shutdown hook. " + e.getMessage()); } this.shutdownHook = null; this.collectLogMessagesAppender = null; IOUtils.closeOutputDirLogging(); }

private void displayDiffResults() throws IOException { File outFile = File.createTempFile("diff", ".htm"); outFile.deleteOnExit(); FileOutputStream outStream = new FileOutputStream(outFile); BufferedWriter out = new BufferedWriter(new OutputStreamWriter(outStream)); out.write("<html><head><title>LOC Differences</title>\n" + SCRIPT + "</head>\n" + "<body bgcolor='#ffffff'>\n" + "<div onMouseOver=\"window.defaultStatus='Metrics'\">\n"); if (addedTable.length() > 0) { out.write("<table border><tr><th>Files Added:</th>" + "<th>Add</th><th>Type</th></tr>"); out.write(addedTable.toString()); out.write("</table><br><br>"); } if (modifiedTable.length() > 0) { out.write("<table border><tr><th>Files Modified:</th>" + "<th>Base</th><th>Del</th><th>Mod</th><th>Add</th>" + "<th>Total</th><th>Type</th></tr>"); out.write(modifiedTable.toString()); out.write("</table><br><br>"); } if (deletedTable.length() > 0) { out.write("<table border><tr><th>Files Deleted:</th>" + "<th>Del</th><th>Type</th></tr>"); out.write(deletedTable.toString()); out.write("</table><br><br>"); } out.write("<table name=METRICS BORDER>\n"); if (modifiedTable.length() > 0 || deletedTable.length() > 0) { out.write("<tr><td>Base:&nbsp;</td><td>"); out.write(Long.toString(base)); out.write("</td></tr>\n<tr><td>Deleted:&nbsp;</td><td>"); out.write(Long.toString(deleted)); out.write("</td></tr>\n<tr><td>Modified:&nbsp;</td><td>"); out.write(Long.toString(modified)); out.write("</td></tr>\n<tr><td>Added:&nbsp;</td><td>"); out.write(Long.toString(added)); out.write("</td></tr>\n<tr><td>New & Changed:&nbsp;</td><td>"); out.write(Long.toString(added + modified)); out.write("</td></tr>\n"); } out.write("<tr><td>Total:&nbsp;</td><td>"); out.write(Long.toString(total)); out.write("</td></tr>\n</table></div>"); redlinesOut.close(); out.flush(); InputStream redlines = new FileInputStream(redlinesTempFile); byte[] buffer = new byte[4096]; int bytesRead; while ((bytesRead = redlines.read(buffer)) != -1) outStream.write(buffer, 0, bytesRead); outStream.write("</BODY></HTML>".getBytes()); outStream.close(); Browser.launch(outFile.toURL().toString()); }

private void copyFileToDir(MyFile file, MyFile to, wlPanel panel) throws IOException { Utilities.print("started copying " + file.getAbsolutePath() + "\n"); FileOutputStream fos = new FileOutputStream(new File(to.getAbsolutePath())); FileChannel foc = fos.getChannel(); FileInputStream fis = new FileInputStream(new File(file.getAbsolutePath())); FileChannel fic = fis.getChannel(); Date d1 = new Date(); long amount = foc.transferFrom(fic, rest, fic.size() - rest); fic.close(); foc.force(false); foc.close(); Date d2 = new Date(); long time = d2.getTime() - d1.getTime(); double secs = time / 1000.0; double rate = amount / secs; frame.getStatusArea().append(secs + "s " + "amount: " + Utilities.humanReadable(amount) + " rate: " + Utilities.humanReadable(rate) + "/s\n", "black"); panel.updateView(); }

static synchronized Person lookup(PhoneNumber number, String siteName) { Vector<Person> foundPersons = new Vector<Person>(5); if (number.isFreeCall()) { Person p = new Person("", "FreeCall"); p.addNumber(number); foundPersons.add(p); } else if (number.isSIPNumber() || number.isQuickDial()) { Person p = new Person(); p.addNumber(number); foundPersons.add(p); } else if (ReverseLookup.rlsMap.containsKey(number.getCountryCode())) { nummer = number.getAreaNumber(); rls_list = ReverseLookup.rlsMap.get(number.getCountryCode()); Debug.info("Begin reverselookup for: " + nummer); if (nummer.startsWith(number.getCountryCode())) nummer = nummer.substring(number.getCountryCode().length()); city = ""; for (int i = 0; i < rls_list.size(); i++) { yield(); rls = rls_list.get(i); if (!siteName.equals("") && !siteName.equals(rls.getName())) { Debug.warning("This lookup should be done using a specific site, skipping"); continue; } prefix = rls.getPrefix(); ac_length = rls.getAreaCodeLength(); if (!nummer.startsWith(prefix)) nummer = prefix + nummer; urlstr = rls.getURL(); if (urlstr.contains("$AREACODE")) { urlstr = urlstr.replaceAll("\\$AREACODE", nummer.substring(prefix.length(), ac_length + prefix.length())); urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length)); } else if (urlstr.contains("$PFXAREACODE")) { urlstr = urlstr.replaceAll("\\$PFXAREACODE", nummer.substring(0, prefix.length() + ac_length)); urlstr = urlstr.replaceAll("\\$NUMBER", nummer.substring(prefix.length() + ac_length)); } else urlstr = urlstr.replaceAll("\\$NUMBER", nummer); Debug.info("Reverse lookup using: " + urlstr); url = null; data = new String[dataLength]; try { url = new URL(urlstr); if (url != null) { try { con = url.openConnection(); con.setConnectTimeout(5000); con.setReadTimeout(15000); con.addRequestProperty("User-Agent", userAgent); con.connect(); header = ""; charSet = ""; for (int j = 0; ; j++) { String headerName = con.getHeaderFieldKey(j); String headerValue = con.getHeaderField(j); if (headerName == null && headerValue == null) { break; } if ("content-type".equalsIgnoreCase(headerName)) { String[] split = headerValue.split(";", 2); for (int k = 0; k < split.length; k++) { if (split[k].trim().toLowerCase().startsWith("charset=")) { String[] charsetSplit = split[k].split("="); charSet = charsetSplit[1].trim(); } } } header += headerName + ": " + headerValue + " | "; } Debug.debug("Header of " + rls.getName() + ":" + header); Debug.debug("CHARSET : " + charSet); BufferedReader d; if (charSet.equals("")) { d = new BufferedReader(new InputStreamReader(con.getInputStream(), "ISO-8859-1")); } else { d = new BufferedReader(new InputStreamReader(con.getInputStream(), charSet)); } int lines = 0; while (null != ((str = d.readLine()))) { data[lines] = str; yield(); if (lines >= dataLength) { System.err.println("Result > " + dataLength + " Lines"); break; } lines++; } d.close(); Debug.info("Begin processing response from " + rls.getName()); for (int j = 0; j < rls.size(); j++) { yield(); firstname = ""; lastname = ""; company = ""; street = ""; zipcode = ""; city = ""; Person p = null; patterns = rls.getEntry(j); Pattern namePattern = null; Pattern streetPattern = null; Pattern cityPattern = null; Pattern zipcodePattern = null; Pattern firstnamePattern = null; Pattern lastnamePattern = null; Matcher nameMatcher = null; Matcher streetMatcher = null; Matcher cityMatcher = null; Matcher zipcodeMatcher = null; Matcher firstnameMatcher = null; Matcher lastnameMatcher = null; if (!patterns[ReverseLookupSite.NAME].equals("") && (patterns[ReverseLookupSite.FIRSTNAME].equals("") && patterns[ReverseLookupSite.LASTNAME].equals(""))) { namePattern = Pattern.compile(patterns[ReverseLookupSite.NAME]); } if (!patterns[ReverseLookupSite.STREET].equals("")) { streetPattern = Pattern.compile(patterns[ReverseLookupSite.STREET]); } if (!patterns[ReverseLookupSite.CITY].equals("")) { cityPattern = Pattern.compile(patterns[ReverseLookupSite.CITY]); } if (!patterns[ReverseLookupSite.ZIPCODE].equals("")) { zipcodePattern = Pattern.compile(patterns[ReverseLookupSite.ZIPCODE]); } if (!patterns[ReverseLookupSite.FIRSTNAME].equals("")) { firstnamePattern = Pattern.compile(patterns[ReverseLookupSite.FIRSTNAME]); } if (!patterns[ReverseLookupSite.LASTNAME].equals("")) { lastnamePattern = Pattern.compile(patterns[ReverseLookupSite.LASTNAME]); } for (int line = 0; line < dataLength; line++) { if (data[line] != null) { int spaceAlternative = 160; data[line] = data[line].replaceAll(new Character((char) spaceAlternative).toString(), " "); if (lastnamePattern != null) { lastnameMatcher = lastnamePattern.matcher(data[line]); if (lastnameMatcher.find()) { str = ""; for (int k = 1; k <= lastnameMatcher.groupCount(); k++) { if (lastnameMatcher.group(k) != null) str = str + lastnameMatcher.group(k).trim() + " "; } lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str)); lastname = lastname.trim(); lastname = lastname.replaceAll(",", ""); lastname = lastname.replaceAll("%20", " "); lastname = JFritzUtils.replaceSpecialCharsUTF(lastname); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname)); lastname = JFritzUtils.removeDuplicateWhitespace(lastname); if ("lastname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setLastName(lastname); } } } yield(); if (firstnamePattern != null) { firstnameMatcher = firstnamePattern.matcher(data[line]); if (firstnameMatcher.find()) { str = ""; for (int k = 1; k <= firstnameMatcher.groupCount(); k++) { if (firstnameMatcher.group(k) != null) str = str + firstnameMatcher.group(k).trim() + " "; } firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(str)); firstname = firstname.trim(); firstname = firstname.replaceAll(",", ""); firstname = firstname.replaceAll("%20", " "); firstname = JFritzUtils.replaceSpecialCharsUTF(firstname); firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname)); firstname = JFritzUtils.removeDuplicateWhitespace(firstname); if ("firstname".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setFirstName(firstname); } } } yield(); if (namePattern != null) { nameMatcher = namePattern.matcher(data[line]); if (nameMatcher.find()) { str = ""; for (int k = 1; k <= nameMatcher.groupCount(); k++) { if (nameMatcher.group(k) != null) str = str + nameMatcher.group(k).trim() + " "; } String[] split; split = str.split(" ", 2); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(split[0])); lastname = lastname.trim(); lastname = lastname.replaceAll(",", ""); lastname = lastname.replaceAll("%20", " "); lastname = JFritzUtils.replaceSpecialCharsUTF(lastname); lastname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(lastname)); lastname = JFritzUtils.removeDuplicateWhitespace(lastname); if (split[1].length() > 0) { firstname = HTMLUtil.stripEntities(split[1]); if ((firstname.indexOf(" ") > -1) && (firstname.indexOf(" u.") == -1)) { company = JFritzUtils.removeLeadingSpaces(firstname.substring(firstname.indexOf(" ")).trim()); firstname = JFritzUtils.removeLeadingSpaces(firstname.substring(0, firstname.indexOf(" ")).trim()); } else { firstname = JFritzUtils.removeLeadingSpaces(firstname.replaceAll(" u. ", " und ")); } } firstname = firstname.replaceAll("%20", " "); firstname = JFritzUtils.replaceSpecialCharsUTF(firstname); firstname = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(firstname)); firstname = JFritzUtils.removeDuplicateWhitespace(firstname); firstname = firstname.trim(); company = company.replaceAll("%20", " "); company = JFritzUtils.replaceSpecialCharsUTF(company); company = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(company)); company = JFritzUtils.removeDuplicateWhitespace(company); company = company.trim(); if ("name".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); if (company.length() > 0) { p.addNumber(number.getIntNumber(), "business"); } else { p.addNumber(number.getIntNumber(), "home"); } foundPersons.add(p); } if (p != null) { p.setFirstName(firstname); p.setLastName(lastname); p.setCompany(company); } } } yield(); if (streetPattern != null) { streetMatcher = streetPattern.matcher(data[line]); if (streetMatcher.find()) { str = ""; for (int k = 1; k <= streetMatcher.groupCount(); k++) { if (streetMatcher.group(k) != null) str = str + streetMatcher.group(k).trim() + " "; } street = str.replaceAll("%20", " "); street = JFritzUtils.replaceSpecialCharsUTF(street); street = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(street)); street = JFritzUtils.removeDuplicateWhitespace(street); street = street.trim(); if ("street".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setStreet(street); } } } yield(); if (cityPattern != null) { cityMatcher = cityPattern.matcher(data[line]); if (cityMatcher.find()) { str = ""; for (int k = 1; k <= cityMatcher.groupCount(); k++) { if (cityMatcher.group(k) != null) str = str + cityMatcher.group(k).trim() + " "; } city = str.replaceAll("%20", " "); city = JFritzUtils.replaceSpecialCharsUTF(city); city = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(city)); city = JFritzUtils.removeDuplicateWhitespace(city); city = city.trim(); if ("city".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setCity(city); } } } yield(); if (zipcodePattern != null) { zipcodeMatcher = zipcodePattern.matcher(data[line]); if (zipcodeMatcher.find()) { str = ""; for (int k = 1; k <= zipcodeMatcher.groupCount(); k++) { if (zipcodeMatcher.group(k) != null) str = str + zipcodeMatcher.group(k).trim() + " "; } zipcode = str.replaceAll("%20", " "); zipcode = JFritzUtils.replaceSpecialCharsUTF(zipcode); zipcode = JFritzUtils.removeLeadingSpaces(HTMLUtil.stripEntities(zipcode)); zipcode = JFritzUtils.removeDuplicateWhitespace(zipcode); zipcode = zipcode.trim(); if ("zipcode".equals(patterns[ReverseLookupSite.FIRSTOCCURANCE])) { p = new Person(); p.addNumber(number.getIntNumber(), "home"); foundPersons.add(p); } if (p != null) { p.setPostalCode(zipcode); } } } } } if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) break; } yield(); if (!firstname.equals("") || !lastname.equals("") || !company.equals("")) { if (city.equals("")) { if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer); } return foundPersons.get(0); } } catch (IOException e1) { Debug.error("Error while retrieving " + urlstr); } } } catch (MalformedURLException e) { Debug.error("URL invalid: " + urlstr); } } yield(); Debug.warning("No match for " + nummer + " found"); if (city.equals("")) { if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(nummer); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(nummer); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(nummer); } Person p = new Person("", "", "", "", "", city, "", ""); p.addNumber(number.getAreaNumber(), "home"); return p; } else { Debug.warning("No reverse lookup sites for: " + number.getCountryCode()); Person p = new Person(); p.addNumber(number.getAreaNumber(), "home"); if (number.getCountryCode().equals(ReverseLookup.GERMANY_CODE)) city = ReverseLookupGermany.getCity(number.getIntNumber()); else if (number.getCountryCode().equals(ReverseLookup.AUSTRIA_CODE)) city = ReverseLookupAustria.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.USA_CODE)) city = ReverseLookupUnitedStates.getCity(number.getIntNumber()); else if (number.getCountryCode().startsWith(ReverseLookup.TURKEY_CODE)) city = ReverseLookupTurkey.getCity(number.getIntNumber()); p.setCity(city); return p; } return new Person("not found", "Person"); }

private void copyFile(File sourceFile, File destFile) throws IOException { if (!sourceFile.exists()) { return; } if (!destFile.exists()) { destFile.createNewFile(); } FileChannel source = null; FileChannel destination = null; source = new FileInputStream(sourceFile).getChannel(); destination = new FileOutputStream(destFile).getChannel(); if (destination != null && source != null) { destination.transferFrom(source, 0, source.size()); } if (source != null) { source.close(); } if (destination != null) { destination.close(); } }

@Override public void vote(String urlString, Map<String, String> headData, Map<String, String> paramData) { HttpURLConnection httpConn = null; try { URL url = new URL(urlString); httpConn = (HttpURLConnection) url.openConnection(); String cookies = getCookies(httpConn); System.out.println(cookies); BufferedReader post = new BufferedReader(new InputStreamReader(httpConn.getInputStream(), "GB2312")); String text = null; while ((text = post.readLine()) != null) { System.out.println(text); } } catch (MalformedURLException e) { e.printStackTrace(); throw new VoteBeanException("网址不正确", e); } catch (IOException e) { e.printStackTrace(); throw new VoteBeanException("不能打开网址", e); } }

private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); }

static void copyFile(File file, File file1) throws IOException { byte abyte0[] = new byte[512]; FileInputStream fileinputstream = new FileInputStream(file); FileOutputStream fileoutputstream = new FileOutputStream(file1); int i; while ((i = fileinputstream.read(abyte0)) > 0) fileoutputstream.write(abyte0, 0, i); fileinputstream.close(); fileoutputstream.close(); }

public Void doInBackground() { setProgress(0); for (int i = 0; i < uploadFiles.size(); i++) { String filePath = uploadFiles.elementAt(i).getFilePath(); String fileName = uploadFiles.elementAt(i).getFileName(); String fileMsg = "Uploading file " + (i + 1) + "/" + uploadFiles.size() + "\n"; this.publish(fileMsg); try { File inFile = new File(filePath); FileInputStream in = new FileInputStream(inFile); byte[] inBytes = new byte[(int) chunkSize]; int count = 1; int maxCount = (int) (inFile.length() / chunkSize); if (inFile.length() % chunkSize > 0) { maxCount++; } int readCount = 0; readCount = in.read(inBytes); while (readCount > 0) { File splitFile = File.createTempFile("upl", null, null); String splitName = splitFile.getPath(); FileOutputStream out = new FileOutputStream(splitFile); out.write(inBytes, 0, readCount); out.close(); boolean chunkFinal = (count == maxCount); fileMsg = " - Sending chunk " + count + "/" + maxCount + ": "; this.publish(fileMsg); boolean uploadSuccess = false; int uploadTries = 0; while (!uploadSuccess && uploadTries <= 5) { uploadTries++; boolean uploadStatus = upload(splitName, fileName, count, chunkFinal); if (uploadStatus) { fileMsg = "OK\n"; this.publish(fileMsg); uploadSuccess = true; } else { fileMsg = "ERROR\n"; this.publish(fileMsg); uploadSuccess = false; } } if (!uploadSuccess) { fileMsg = "There was an error uploading your files. Please let the pipeline administrator know about this problem. Cut and paste the messages in this box, and supply them.\n"; this.publish(fileMsg); errorFlag = true; return null; } float thisProgress = (count * 100) / (maxCount); float completeProgress = (i * (100 / uploadFiles.size())); float totalProgress = completeProgress + (thisProgress / uploadFiles.size()); setProgress((int) totalProgress); splitFile.delete(); readCount = in.read(inBytes); count++; } } catch (Exception e) { this.publish(e.toString()); } } return null; }

public void checkin(Object _document) { this.document = (Document) _document; synchronized (url) { OutputStream outputStream = null; try { if ("file".equals(url.getProtocol())) { outputStream = new FileOutputStream(url.getFile()); } else { URLConnection connection = url.openConnection(); connection.setDoOutput(true); outputStream = connection.getOutputStream(); } new XMLOutputter(" ", true).output(this.document, outputStream); outputStream.flush(); outputStream.close(); } catch (IOException e) { e.printStackTrace(); } } }

public static void extractFile(String jarArchive, String fileToExtract, String destination) { FileWriter writer = null; ZipInputStream zipStream = null; try { FileInputStream inputStream = new FileInputStream(jarArchive); BufferedInputStream bufferedStream = new BufferedInputStream(inputStream); zipStream = new ZipInputStream(bufferedStream); writer = new FileWriter(new File(destination)); ZipEntry zipEntry = null; while ((zipEntry = zipStream.getNextEntry()) != null) { if (zipEntry.getName().equals(fileToExtract)) { int size = (int) zipEntry.getSize(); for (int i = 0; i < size; i++) { writer.write(zipStream.read()); } } } } catch (IOException e) { e.printStackTrace(); } finally { if (zipStream != null) try { zipStream.close(); } catch (IOException e) { e.printStackTrace(); } if (writer != null) try { writer.close(); } catch (IOException e) { e.printStackTrace(); } } }

protected void update(String sql, Object[] args) { Connection conn = null; PreparedStatement pstmt = null; try { conn = JdbcUtils.getConnection(); conn.setAutoCommit(false); pstmt = conn.prepareStatement(sql); this.setParameters(pstmt, args); pstmt.executeUpdate(); conn.commit(); conn.setAutoCommit(true); } catch (SQLException e) { try { if (conn != null) { conn.rollback(); conn.setAutoCommit(true); } } catch (SQLException ex) { ex.printStackTrace(); } throw new JdbcDaoException(e.getMessage(), e); } finally { JdbcUtils.free(pstmt, conn); } }

public boolean delete(int id) { boolean deletionOk = false; Connection conn = null; try { conn = db.getConnection(); conn.setAutoCommit(false); String sql = "DELETE FROM keyphrases WHERE website_id=?"; PreparedStatement ps = conn.prepareStatement(sql); ps.setInt(1, id); deletionOk = ps.executeUpdate() == 1; ps.close(); sql = "DELETE FROM websites WHERE id=?"; ps = conn.prepareStatement(sql); ps.setInt(1, id); boolean success = ps.executeUpdate() == 1; deletionOk = deletionOk && success; ps.close(); conn.commit(); conn.setAutoCommit(true); } catch (SQLException sqle) { try { conn.rollback(); conn.setAutoCommit(true); } catch (SQLException sex) { throw new OsseoFailure("SQL error: roll back failed. ", sex); } throw new OsseoFailure("SQL error: cannot remove website with id " + id + ".", sqle); } finally { db.putConnection(conn); } return deletionOk; }

private static void copyFile(File inputFile, File outputFile) throws IOException { FileReader in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); }

public static void copy(FileInputStream source, FileOutputStream dest) throws IOException { FileChannel in = null, out = null; try { in = source.getChannel(); out = dest.getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); } }

public void testPreparedStatement0009() throws Exception { Statement stmt = con.createStatement(); stmt.executeUpdate("create table #t0009 " + " (i integer not null, " + " s char(10) not null) "); con.setAutoCommit(false); PreparedStatement pstmt = con.prepareStatement("insert into #t0009 values (?, ?)"); int rowsToAdd = 8; final String theString = "abcdefghijklmnopqrstuvwxyz"; int count = 0; for (int i = 1; i <= rowsToAdd; i++) { pstmt.setInt(1, i); pstmt.setString(2, theString.substring(0, i)); count += pstmt.executeUpdate(); } pstmt.close(); assertEquals(count, rowsToAdd); con.rollback(); ResultSet rs = stmt.executeQuery("select s, i from #t0009"); assertNotNull(rs); count = 0; while (rs.next()) { count++; assertEquals(rs.getString(1).trim().length(), rs.getInt(2)); } assertEquals(count, 0); con.commit(); pstmt = con.prepareStatement("insert into #t0009 values (?, ?)"); rowsToAdd = 6; count = 0; for (int i = 1; i <= rowsToAdd; i++) { pstmt.setInt(1, i); pstmt.setString(2, theString.substring(0, i)); count += pstmt.executeUpdate(); } assertEquals(count, rowsToAdd); con.commit(); pstmt.close(); rs = stmt.executeQuery("select s, i from #t0009"); count = 0; while (rs.next()) { count++; assertEquals(rs.getString(1).trim().length(), rs.getInt(2)); } assertEquals(count, rowsToAdd); con.commit(); stmt.close(); con.setAutoCommit(true); }

@SuppressWarnings("unchecked") protected void processDownloadAction(HttpServletRequest request, HttpServletResponse response) throws Exception { File transformationFile = new File(xslBase, "file-info.xsl"); HashMap<String, Object> params = new HashMap<String, Object>(); params.putAll(request.getParameterMap()); params.put("{" + Definitions.CONFIGURATION_NAMESPACE + "}configuration", configuration); params.put("{" + Definitions.REQUEST_NAMESPACE + "}request", request); params.put("{" + Definitions.RESPONSE_NAMESPACE + "}response", response); params.put("{" + Definitions.SESSION_NAMESPACE + "}session", request.getSession()); params.put("{" + Definitions.INFOFUZE_NAMESPACE + "}development-mode", new Boolean(Config.getInstance().isDevelopmentMode())); Transformer transformer = new Transformer(); transformer.setTransformationFile(transformationFile); transformer.setParams(params); transformer.setTransformMode(TransformMode.NORMAL); transformer.setConfiguration(configuration); transformer.setErrorListener(new TransformationErrorListener(response)); transformer.setLogInfo(false); DataSourceIf dataSource = new NullSource(); Document fileInfoDoc = XmlUtils.getEmptyDOM(); DOMResult result = new DOMResult(fileInfoDoc); transformer.transform((Source) dataSource, result); Element documentElement = fileInfoDoc.getDocumentElement(); if (documentElement.getLocalName().equals("null")) { response.sendError(HttpServletResponse.SC_UNAUTHORIZED); return; } InputStream is = null; try { XPath xpath = XPathFactory.newInstance().newXPath(); String sourceType = XPathUtils.getStringValue(xpath, "source-type", documentElement, null); String location = XPathUtils.getStringValue(xpath, "location", documentElement, null); String fileName = XPathUtils.getStringValue(xpath, "file-name", documentElement, null); String mimeType = XPathUtils.getStringValue(xpath, "mime-type", documentElement, null); String encoding = XPathUtils.getStringValue(xpath, "encoding", documentElement, null); if (StringUtils.equals(sourceType, "cifsSource")) { String domain = XPathUtils.getStringValue(xpath, "domain", documentElement, null); String userName = XPathUtils.getStringValue(xpath, "username", documentElement, null); String password = XPathUtils.getStringValue(xpath, "password", documentElement, null); URI uri = new URI(location); if (StringUtils.isNotBlank(userName)) { String userInfo = ""; if (StringUtils.isNotBlank(domain)) { userInfo = userInfo + domain + ";"; } userInfo = userInfo + userName; if (StringUtils.isNotBlank(password)) { userInfo = userInfo + ":" + password; } uri = new URI(uri.getScheme(), userInfo, uri.getHost(), uri.getPort(), uri.getPath(), uri.getQuery(), uri.getFragment()); } SmbFile smbFile = new SmbFile(uri.toURL()); is = new SmbFileInputStream(smbFile); } else if (StringUtils.equals(sourceType, "localFileSystemSource")) { File file = new File(location); is = new FileInputStream(file); } else { logger.error("Source type \"" + ((sourceType != null) ? sourceType : "") + "\" not supported"); response.sendError(HttpServletResponse.SC_INTERNAL_SERVER_ERROR); return; } if (StringUtils.isBlank(mimeType) && StringUtils.isBlank(encoding)) { response.setContentType(Definitions.MIMETYPE_BINARY); } else if (StringUtils.isBlank(encoding)) { response.setContentType(mimeType); } else { response.setContentType(mimeType + ";charset=" + encoding); } if (request.getParameterMap().containsKey(Definitions.REQUEST_PARAMNAME_DOWNLOAD)) { response.setHeader("Content-Disposition", "attachment; filename=" + fileName); } IOUtils.copy(new BufferedInputStream(is), response.getOutputStream()); } finally { if (is != null) { is.close(); } } }

@RequestMapping(value = "/privatefiles/{file_name}") public void getFile(@PathVariable("file_name") String fileName, HttpServletResponse response, Principal principal) { try { Boolean validUser = false; final String currentUser = principal.getName(); Authentication auth = SecurityContextHolder.getContext().getAuthentication(); if (!auth.getPrincipal().equals(new String("anonymousUser"))) { MetabolightsUser metabolightsUser = (MetabolightsUser) auth.getPrincipal(); if (metabolightsUser != null && metabolightsUser.isCurator()) validUser = true; } if (currentUser != null) { Study study = studyService.getBiiStudy(fileName, true); Collection<User> users = study.getUsers(); Iterator<User> iter = users.iterator(); while (iter.hasNext()) { User user = iter.next(); if (user.getUserName().equals(currentUser)) { validUser = true; break; } } } if (!validUser) throw new RuntimeException(PropertyLookup.getMessage("Entry.notAuthorised")); try { InputStream is = new FileInputStream(privateFtpDirectory + fileName + ".zip"); response.setContentType("application/zip"); IOUtils.copy(is, response.getOutputStream()); } catch (Exception e) { throw new RuntimeException(PropertyLookup.getMessage("Entry.fileMissing")); } response.flushBuffer(); } catch (IOException ex) { logger.info("Error writing file to output stream. Filename was '" + fileName + "'"); throw new RuntimeException("IOError writing file to output stream"); } }

public AudioInputStream getAudioInputStream(URL url) throws UnsupportedAudioFileException, IOException { if (TDebug.TraceAudioFileReader) { TDebug.out("MpegAudioFileReader.getAudioInputStream(URL): begin"); } long lFileLengthInBytes = AudioSystem.NOT_SPECIFIED; URLConnection conn = url.openConnection(); boolean isShout = false; int toRead = 4; byte[] head = new byte[toRead]; conn.setRequestProperty("Icy-Metadata", "1"); BufferedInputStream bInputStream = new BufferedInputStream(conn.getInputStream()); bInputStream.mark(toRead); int read = bInputStream.read(head, 0, toRead); if ((read > 2) && (((head[0] == 'I') | (head[0] == 'i')) && ((head[1] == 'C') | (head[1] == 'c')) && ((head[2] == 'Y') | (head[2] == 'y')))) isShout = true; bInputStream.reset(); InputStream inputStream = null; if (isShout == true) { IcyInputStream icyStream = new IcyInputStream(bInputStream); icyStream.addTagParseListener(IcyListener.getInstance()); inputStream = icyStream; } else { String metaint = conn.getHeaderField("icy-metaint"); if (metaint != null) { IcyInputStream icyStream = new IcyInputStream(bInputStream, metaint); icyStream.addTagParseListener(IcyListener.getInstance()); inputStream = icyStream; } else { inputStream = bInputStream; } } AudioInputStream audioInputStream = null; try { audioInputStream = getAudioInputStream(inputStream, lFileLengthInBytes); } catch (UnsupportedAudioFileException e) { inputStream.close(); throw e; } catch (IOException e) { inputStream.close(); throw e; } if (TDebug.TraceAudioFileReader) { TDebug.out("MpegAudioFileReader.getAudioInputStream(URL): end"); } return audioInputStream; }

public void googleImageSearch(String start) { try { String u = "http://images.google.com/images?q=" + custom + start; if (u.contains(" ")) { u = u.replace(" ", "+"); } URL url = new URL(u); HttpURLConnection httpcon = (HttpURLConnection) url.openConnection(); httpcon.addRequestProperty("User-Agent", "Mozilla/4.76"); BufferedReader readIn = new BufferedReader(new InputStreamReader(httpcon.getInputStream())); googleImages.clear(); String text = ""; String lin = ""; while ((lin = readIn.readLine()) != null) { text += lin; } readIn.close(); if (text.contains("\n")) { text = text.replace("\n", ""); } String[] array = text.split("\\Qhref=\"/imgres?imgurl=\\E"); for (String s : array) { if (s.startsWith("http://") || s.startsWith("https://") && s.contains("&amp;")) { String s1 = s.substring(0, s.indexOf("&amp;")); googleImages.add(s1); } } } catch (Exception ex4) { MusicBoxView.showErrorDialog(ex4); } jButton4.setEnabled(true); jButton2.setEnabled(true); getContentPane().remove(jLabel1); ImageIcon icon; try { icon = new ImageIcon(new URL(googleImages.elementAt(googleImageLocation))); int h = icon.getIconHeight(); int w = icon.getIconWidth(); jLabel1.setSize(w, h); jLabel1.setIcon(icon); add(jLabel1, BorderLayout.CENTER); } catch (MalformedURLException ex) { MusicBoxView.showErrorDialog(ex); jLabel1.setIcon(MusicBoxView.noImage); } add(jPanel1, BorderLayout.PAGE_END); pack(); }

@Override public int updateStatus(UserInfo userInfo, String status) throws Exception { OAuthConsumer consumer = SnsConstant.getOAuthConsumer(SnsConstant.SOHU); consumer.setTokenWithSecret(userInfo.getAccessToken(), userInfo.getAccessSecret()); try { URL url = new URL(SnsConstant.SOHU_UPDATE_STATUS_URL); HttpURLConnection request = (HttpURLConnection) url.openConnection(); request.setDoOutput(true); request.setRequestMethod("POST"); HttpParameters para = new HttpParameters(); para.put("status", StringUtils.utf8Encode(status).replaceAll("\\+", "%20")); consumer.setAdditionalParameters(para); consumer.sign(request); OutputStream ot = request.getOutputStream(); ot.write(("status=" + URLEncoder.encode(status, "utf-8")).replaceAll("\\+", "%20").getBytes()); ot.flush(); ot.close(); System.out.println("Sending request..."); request.connect(); System.out.println("Response: " + request.getResponseCode() + " " + request.getResponseMessage()); BufferedReader reader = new BufferedReader(new InputStreamReader(request.getInputStream())); String b = null; while ((b = reader.readLine()) != null) { System.out.println(b); } return SnsConstant.SOHU_UPDATE_STATUS_SUCC_WHAT; } catch (Exception e) { SnsConstant.SOHU_OPERATOR_FAIL_REASON = processException(e.getMessage()); return SnsConstant.SOHU_UPDATE_STATUS_FAIL_WHAT; } }

public void copyToZip(ZipOutputStream zout, String entryName) throws IOException { close(); ZipEntry entry = new ZipEntry(entryName); zout.putNextEntry(entry); if (!isEmpty() && this.tmpFile.exists()) { InputStream in = new FileInputStream(this.tmpFile); IOUtils.copyTo(in, zout); in.close(); } zout.flush(); zout.closeEntry(); delete(); }

private List<String> getTaxaList() { List<String> taxa = new Vector<String>(); String domain = m_domain.getStringValue(); String id = ""; if (domain.equalsIgnoreCase("Eukaryota")) id = "eukaryota"; try { URL url = new URL("http://www.ebi.ac.uk/genomes/" + id + ".details.txt"); BufferedReader reader = new BufferedReader(new InputStreamReader(url.openStream())); String link = ""; String key = ""; String name = ""; int counter = 0; String line = ""; reader.readLine(); while ((line = reader.readLine()) != null) { String[] st = line.split("\t"); ena_details ena = new ena_details(st[0], st[1], st[2], st[3], st[4]); ENADataHolder.instance().put(ena.desc, ena); taxa.add(ena.desc); } reader.close(); } catch (MalformedURLException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } return taxa; }

public static boolean encodeFileToFile(String infile, String outfile) { boolean success = false; java.io.InputStream in = null; java.io.OutputStream out = null; try { in = new Base64.InputStream(new java.io.BufferedInputStream(new java.io.FileInputStream(infile)), Base64.ENCODE); out = new java.io.BufferedOutputStream(new java.io.FileOutputStream(outfile)); byte[] buffer = new byte[65536]; int read = -1; while ((read = in.read(buffer)) >= 0) { out.write(buffer, 0, read); } success = true; } catch (java.io.IOException exc) { exc.printStackTrace(); } finally { try { in.close(); } catch (Exception exc) { } try { out.close(); } catch (Exception exc) { } } return success; }

protected String contentString() { String result = null; URL url; String encoding = null; try { url = url(); URLConnection connection = url.openConnection(); connection.setDoInput(true); connection.setDoOutput(false); connection.setUseCaches(false); for (Enumeration e = bindingKeys().objectEnumerator(); e.hasMoreElements(); ) { String key = (String) e.nextElement(); if (key.startsWith("?")) { connection.setRequestProperty(key.substring(1), valueForBinding(key).toString()); } } if (connection.getContentEncoding() != null) { encoding = connection.getContentEncoding(); } if (encoding == null) { encoding = (String) valueForBinding("encoding"); } if (encoding == null) { encoding = "UTF-8"; } InputStream stream = connection.getInputStream(); byte bytes[] = ERXFileUtilities.bytesFromInputStream(stream); stream.close(); result = new String(bytes, encoding); } catch (IOException ex) { throw NSForwardException._runtimeExceptionForThrowable(ex); } return result; }

public static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } }

public CopyAllDataToOtherFolderResponse CopyAllDataToOtherFolder(DPWSContext context, CopyAllDataToOtherFolder CopyAllDataInps) throws DPWSException { CopyAllDataToOtherFolderResponse cpyRp = new CopyAllDataToOtherFolderResponseImpl(); int hany = 0; String errorMsg = null; try { if ((rootDir == null) || (rootDir.length() == (-1))) { errorMsg = LocalStorVerify.ISNT_ROOTFLD; } else { String sourceN = CopyAllDataInps.getSourceName(); String targetN = CopyAllDataInps.getTargetName(); if (LocalStorVerify.isValid(sourceN) && LocalStorVerify.isValid(targetN)) { String srcDir = rootDir + File.separator + sourceN; String trgDir = rootDir + File.separator + targetN; if (LocalStorVerify.isLength(srcDir) && LocalStorVerify.isLength(trgDir)) { for (File fs : new File(srcDir).listFiles()) { File ft = new File(trgDir + '\\' + fs.getName()); FileChannel in = null, out = null; try { in = new FileInputStream(fs).getChannel(); out = new FileOutputStream(ft).getChannel(); long size = in.size(); MappedByteBuffer buf = in.map(FileChannel.MapMode.READ_ONLY, 0, size); out.write(buf); } finally { if (in != null) in.close(); if (out != null) out.close(); hany++; } } } else { errorMsg = LocalStorVerify.FLD_TOOLNG; } } else { errorMsg = LocalStorVerify.ISNT_VALID; } } } catch (Throwable tr) { tr.printStackTrace(); errorMsg = tr.getMessage(); hany = (-1); } if (errorMsg != null) { } cpyRp.setNum(hany); return cpyRp; }

private int writeTraceFile(final File destination_file, final String trace_file_name, final String trace_file_path) { URL url = null; BufferedInputStream is = null; FileOutputStream fo = null; BufferedOutputStream os = null; int b = 0; if (destination_file == null) { return 0; } try { url = new URL("http://" + trace_file_path + "/" + trace_file_name); is = new BufferedInputStream(url.openStream()); fo = new FileOutputStream(destination_file); os = new BufferedOutputStream(fo); while ((b = is.read()) != -1) { os.write(b); } os.flush(); is.close(); os.close(); } catch (Exception e) { System.err.println(url.toString()); Utilities.unexpectedException(e, this, CONTACT); return 0; } return 1; }

public void readData() throws IOException { i = 0; j = 0; URL url = getClass().getResource("resources/tuneGridMaster.dat"); InputStream is = url.openStream(); InputStreamReader isr = new InputStreamReader(is); BufferedReader br = new BufferedReader(isr); s = br.readLine(); StringTokenizer st = new StringTokenizer(s); tune_x[i][j] = Double.parseDouble(st.nextToken()); gridmin = tune_x[i][j]; temp_prev = tune_x[i][j]; tune_y[i][j] = Double.parseDouble(st.nextToken()); kd[i][j] = Double.parseDouble(st.nextToken()); kfs[i][j] = Double.parseDouble(st.nextToken()); kfl[i][j] = Double.parseDouble(st.nextToken()); kdee[i][j] = Double.parseDouble(st.nextToken()); kdc[i][j] = Double.parseDouble(st.nextToken()); kfc[i][j] = Double.parseDouble(st.nextToken()); j++; int k = 0; while ((s = br.readLine()) != null) { st = new StringTokenizer(s); temp_new = Double.parseDouble(st.nextToken()); if (temp_new != temp_prev) { temp_prev = temp_new; i++; j = 0; } tune_x[i][j] = temp_new; tune_y[i][j] = Double.parseDouble(st.nextToken()); kd[i][j] = Double.parseDouble(st.nextToken()); kfs[i][j] = Double.parseDouble(st.nextToken()); kfl[i][j] = Double.parseDouble(st.nextToken()); kdee[i][j] = Double.parseDouble(st.nextToken()); kdc[i][j] = Double.parseDouble(st.nextToken()); kfc[i][j] = Double.parseDouble(st.nextToken()); imax = i; jmax = j; j++; k++; } gridmax = tune_x[i][j - 1]; }

public IStatus runInUIThread(IProgressMonitor monitor) { monitor.beginTask(Strings.MSG_CONNECT_SERVER, 3); InputStream in = null; try { URL url = createOpenUrl(resource, pref); if (url != null) { URLConnection con = url.openConnection(); monitor.worked(1); monitor.setTaskName(Strings.MSG_WAIT_FOR_SERVER); con.connect(); in = con.getInputStream(); in.read(); monitor.worked(1); monitor.setTaskName(NLS.bind(Strings.MSG_OPEN_URL, url)); open(url, resource.getProject(), pref); monitor.worked(1); } } catch (ConnectException con) { if (count < 3) { ConnectAndOpenJob job = new ConnectAndOpenJob(resource, pref, ++count); job.schedule(1000L); } else { Activator.log(con); } } catch (Exception e) { Activator.log(e); } finally { Streams.close(in); monitor.done(); } return Status.OK_STATUS; }

private InputStream loadSource(String url) throws ClientProtocolException, IOException { HttpClient httpclient = new DefaultHttpClient(); httpclient.getParams().setParameter(HTTP.USER_AGENT, "Mozilla/4.0 (compatible; MSIE 7.0b; Windows NT 6.0)"); HttpGet httpget = new HttpGet(url); HttpResponse response = httpclient.execute(httpget); HttpEntity entity = response.getEntity(); return entity.getContent(); }

public static void executa(String arquivo, String filial, String ip) { String drive = arquivo.substring(0, 2); if (drive.indexOf(":") == -1) drive = ""; Properties p = Util.lerPropriedades(arquivo); String servidor = p.getProperty("servidor"); String impressora = p.getProperty("fila"); String arqRel = new String(drive + p.getProperty("arquivo")); String copias = p.getProperty("copias"); if (filial.equalsIgnoreCase(servidor)) { Socket s = null; int tentativas = 0; boolean conectado = false; while (!conectado) { try { tentativas++; System.out.println("Tentando conectar " + ip + " (" + tentativas + ")"); s = new Socket(ip, 7000); conectado = s.isConnected(); } catch (ConnectException ce) { System.err.println(ce.getMessage()); System.err.println(ce.getCause()); } catch (UnknownHostException uhe) { System.err.println(uhe.getMessage()); } catch (IOException ioe) { System.err.println(ioe.getMessage()); } } FileInputStream in = null; BufferedOutputStream out = null; try { in = new FileInputStream(new File(arqRel)); out = new BufferedOutputStream(new GZIPOutputStream(s.getOutputStream())); } catch (FileNotFoundException e3) { e3.printStackTrace(); } catch (IOException e3) { e3.printStackTrace(); } String arqtr = arqRel.substring(2); System.out.println("Proximo arquivo: " + arqRel + " ->" + arqtr); while (arqtr.length() < 30) arqtr += " "; while (impressora.length() < 30) impressora += " "; byte aux[] = new byte[30]; byte cop[] = new byte[2]; try { aux = arqtr.getBytes("UTF8"); out.write(aux); aux = impressora.getBytes("UTF8"); out.write(aux); cop = copias.getBytes("UTF8"); out.write(cop); out.flush(); } catch (UnsupportedEncodingException e2) { e2.printStackTrace(); } catch (IOException e2) { e2.printStackTrace(); } byte b[] = new byte[1024]; int nBytes; try { while ((nBytes = in.read(b)) != -1) out.write(b, 0, nBytes); out.flush(); out.close(); in.close(); s.close(); } catch (IOException e1) { e1.printStackTrace(); } System.out.println("Arquivo " + arqRel + " foi transmitido. \n\n"); try { Thread.sleep(1000); } catch (InterruptedException e) { e.printStackTrace(); } SimpleDateFormat dfArq = new SimpleDateFormat("yyyy-MM-dd"); SimpleDateFormat dfLog = new SimpleDateFormat("yyyy-MM-dd HH:mm:ss"); String arqLog = "log" + filial + dfArq.format(new Date()) + ".txt"; PrintWriter pw = null; try { pw = new PrintWriter(new FileWriter(arqLog, true)); } catch (IOException e) { e.printStackTrace(); } pw.println("Arquivo: " + arquivo + " " + dfLog.format(new Date())); pw.flush(); pw.close(); File f = new File(arquivo); while (!f.delete()) { System.out.println("Erro apagando " + arquivo); } } }

public static synchronized void repartition(File[] sourceFiles, File targetDirectory, String prefix, long maxUnitBases, long maxUnitEntries) throws Exception { if (!targetDirectory.exists()) { if (!targetDirectory.mkdirs()) throw new Exception("Could not create directory " + targetDirectory.getAbsolutePath()); } File tmpFile = new File(targetDirectory, "tmp.fasta"); FileOutputStream fos = new FileOutputStream(tmpFile); FileChannel fco = fos.getChannel(); for (File file : sourceFiles) { FileInputStream fis = new FileInputStream(file); FileChannel fci = fis.getChannel(); ByteBuffer buffer = ByteBuffer.allocate(64000); while (fci.read(buffer) > 0) { buffer.flip(); fco.write(buffer); buffer.clear(); } fci.close(); } fco.close(); FastaFile fastaFile = new FastaFile(tmpFile); fastaFile.split(targetDirectory, prefix, maxUnitBases, maxUnitEntries); tmpFile.delete(); }

boolean copyFileStructure(File oldFile, File newFile) { if (oldFile == null || newFile == null) return false; File searchFile = newFile; do { if (oldFile.equals(searchFile)) return false; searchFile = searchFile.getParentFile(); } while (searchFile != null); if (oldFile.isDirectory()) { if (progressDialog != null) { progressDialog.setDetailFile(oldFile, ProgressDialog.COPY); } if (simulateOnly) { } else { if (!newFile.mkdirs()) return false; } File[] subFiles = oldFile.listFiles(); if (subFiles != null) { if (progressDialog != null) { progressDialog.addWorkUnits(subFiles.length); } for (int i = 0; i < subFiles.length; i++) { File oldSubFile = subFiles[i]; File newSubFile = new File(newFile, oldSubFile.getName()); if (!copyFileStructure(oldSubFile, newSubFile)) return false; if (progressDialog != null) { progressDialog.addProgress(1); if (progressDialog.isCancelled()) return false; } } } } else { if (simulateOnly) { } else { FileReader in = null; FileWriter out = null; try { in = new FileReader(oldFile); out = new FileWriter(newFile); int count; while ((count = in.read()) != -1) out.write(count); } catch (FileNotFoundException e) { return false; } catch (IOException e) { return false; } finally { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { return false; } } } } return true; }

public void writeBack(File destinationFile, boolean makeCopy) throws IOException { if (makeCopy) { FileChannel sourceChannel = new java.io.FileInputStream(getFile()).getChannel(); FileChannel destinationChannel = new java.io.FileOutputStream(destinationFile).getChannel(); sourceChannel.transferTo(0, sourceChannel.size(), destinationChannel); sourceChannel.close(); destinationChannel.close(); } else { getFile().renameTo(destinationFile); } if (getExifTime() != null && getOriginalTime() != null && !getExifTime().equals(getOriginalTime())) { String adjustArgument = "-ts" + m_dfJhead.format(getExifTime()); ProcessBuilder pb = new ProcessBuilder(m_tm.getJheadCommand(), adjustArgument, destinationFile.getAbsolutePath()); pb.directory(destinationFile.getParentFile()); System.out.println(pb.command().get(0) + " " + pb.command().get(1) + " " + pb.command().get(2)); final Process p = pb.start(); try { p.waitFor(); } catch (InterruptedException e) { e.printStackTrace(); } } }

public void extractProfile(String parentDir, String fileName, String profileName) { try { byte[] buf = new byte[1024]; ZipInputStream zipinputstream = null; ZipEntry zipentry; if (createProfileDirectory(profileName, parentDir)) { debug("the profile directory created .starting the profile extraction"); String profilePath = parentDir + File.separator + fileName; zipinputstream = new ZipInputStream(new FileInputStream(profilePath)); zipentry = zipinputstream.getNextEntry(); while (zipentry != null) { String entryName = zipentry.getName(); int n; FileOutputStream fileoutputstream; File newFile = new File(entryName); String directory = newFile.getParent(); if (directory == null) { if (newFile.isDirectory()) break; } fileoutputstream = new FileOutputStream(parentDir + File.separator + profileName + File.separator + newFile.getName()); while ((n = zipinputstream.read(buf, 0, 1024)) > -1) fileoutputstream.write(buf, 0, n); fileoutputstream.close(); zipinputstream.closeEntry(); zipentry = zipinputstream.getNextEntry(); } zipinputstream.close(); debug("deleting the profile.zip file"); File newFile = new File(profilePath); if (newFile.delete()) { debug("the " + "[" + profilePath + "]" + " deleted successfully"); } else { debug("profile" + "[" + profilePath + "]" + "deletion fail"); throw new IllegalArgumentException("Error: deletion error!"); } } else { debug("error creating the profile directory"); } } catch (Exception e) { e.printStackTrace(); } }

void copyFile(File inputFile, File outputFile) { try { FileReader in; in = new FileReader(inputFile); FileWriter out = new FileWriter(outputFile); int c; while ((c = in.read()) != -1) out.write(c); in.close(); out.close(); } catch (FileNotFoundException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } }

public void run() { String s; s = ""; try { URL url = new URL("http://www.m-w.com/dictionary/" + word); BufferedReader in = new BufferedReader(new InputStreamReader(url.openStream())); String str; while (((str = in.readLine()) != null) && (!stopped)) { s = s + str; } in.close(); } catch (MalformedURLException e) { } catch (IOException e) { } Pattern pattern = Pattern.compile("Main Entry:.+?<br>(.+?)</td>", Pattern.CASE_INSENSITIVE | Pattern.DOTALL); Matcher matcher = pattern.matcher(s); java.io.StringWriter wr = new java.io.StringWriter(); HTMLDocument doc = null; HTMLEditorKit kit = (HTMLEditorKit) editor.getEditorKit(); try { doc = (HTMLDocument) editor.getDocument(); } catch (Exception e) { } System.out.println(wr); editor.setContentType("text/html"); if (matcher.find()) try { kit.insertHTML(doc, editor.getCaretPosition(), "<HR>" + matcher.group(1) + "<HR>", 0, 0, null); } catch (Exception e) { System.out.println(e.getMessage()); } else try { kit.insertHTML(doc, editor.getCaretPosition(), "<HR><FONT COLOR='RED'>NOT FOUND!!</FONT><HR>", 0, 0, null); } catch (Exception e) { System.out.println(e.getMessage()); } button.setEnabled(true); }

public static String[] readStats() throws Exception { URL url = null; BufferedReader reader = null; StringBuilder stringBuilder; try { url = new URL("http://localhost:" + port + webctx + "/shared/js/libOO/health_check.sjs"); HttpURLConnection connection = (HttpURLConnection) url.openConnection(); connection.setRequestMethod("GET"); connection.setReadTimeout(10 * 1000); connection.connect(); reader = new BufferedReader(new InputStreamReader(connection.getInputStream())); stringBuilder = new StringBuilder(); String line = null; while ((line = reader.readLine()) != null) { stringBuilder.append(line); } return stringBuilder.toString().split(","); } catch (Exception e) { e.printStackTrace(); throw e; } finally { if (reader != null) { try { reader.close(); } catch (IOException ioe) { ioe.printStackTrace(); } } } }

public void convert(File src, File dest) throws IOException { InputStream in = new BufferedInputStream(new FileInputStream(src)); DcmParser p = pfact.newDcmParser(in); Dataset ds = fact.newDataset(); p.setDcmHandler(ds.getDcmHandler()); try { FileFormat format = p.detectFileFormat(); if (format != FileFormat.ACRNEMA_STREAM) { System.out.println("\n" + src + ": not an ACRNEMA stream!"); return; } p.parseDcmFile(format, Tags.PixelData); if (ds.contains(Tags.StudyInstanceUID) || ds.contains(Tags.SeriesInstanceUID) || ds.contains(Tags.SOPInstanceUID) || ds.contains(Tags.SOPClassUID)) { System.out.println("\n" + src + ": contains UIDs!" + " => probable already DICOM - do not convert"); return; } boolean hasPixelData = p.getReadTag() == Tags.PixelData; boolean inflate = hasPixelData && ds.getInt(Tags.BitsAllocated, 0) == 12; int pxlen = p.getReadLength(); if (hasPixelData) { if (inflate) { ds.putUS(Tags.BitsAllocated, 16); pxlen = pxlen * 4 / 3; } if (pxlen != (ds.getInt(Tags.BitsAllocated, 0) >>> 3) * ds.getInt(Tags.Rows, 0) * ds.getInt(Tags.Columns, 0) * ds.getInt(Tags.NumberOfFrames, 1) * ds.getInt(Tags.NumberOfSamples, 1)) { System.out.println("\n" + src + ": mismatch pixel data length!" + " => do not convert"); return; } } ds.putUI(Tags.StudyInstanceUID, uid(studyUID)); ds.putUI(Tags.SeriesInstanceUID, uid(seriesUID)); ds.putUI(Tags.SOPInstanceUID, uid(instUID)); ds.putUI(Tags.SOPClassUID, classUID); if (!ds.contains(Tags.NumberOfSamples)) { ds.putUS(Tags.NumberOfSamples, 1); } if (!ds.contains(Tags.PhotometricInterpretation)) { ds.putCS(Tags.PhotometricInterpretation, "MONOCHROME2"); } if (fmi) { ds.setFileMetaInfo(fact.newFileMetaInfo(ds, UIDs.ImplicitVRLittleEndian)); } OutputStream out = new BufferedOutputStream(new FileOutputStream(dest)); try { } finally { ds.writeFile(out, encodeParam()); if (hasPixelData) { if (!skipGroupLen) { out.write(PXDATA_GROUPLEN); int grlen = pxlen + 8; out.write((byte) grlen); out.write((byte) (grlen >> 8)); out.write((byte) (grlen >> 16)); out.write((byte) (grlen >> 24)); } out.write(PXDATA_TAG); out.write((byte) pxlen); out.write((byte) (pxlen >> 8)); out.write((byte) (pxlen >> 16)); out.write((byte) (pxlen >> 24)); } if (inflate) { int b2, b3; for (; pxlen > 0; pxlen -= 3) { out.write(in.read()); b2 = in.read(); b3 = in.read(); out.write(b2 & 0x0f); out.write(b2 >> 4 | ((b3 & 0x0f) << 4)); out.write(b3 >> 4); } } else { for (; pxlen > 0; --pxlen) { out.write(in.read()); } } out.close(); } System.out.print('.'); } finally { in.close(); } }

public static void unzip2(String strZipFile, String folder) throws IOException, ArchiveException { FileUtil.fileExists(strZipFile, true); final InputStream is = new FileInputStream(strZipFile); ArchiveInputStream in = new ArchiveStreamFactory().createArchiveInputStream("zip", is); ZipArchiveEntry entry = null; OutputStream out = null; while ((entry = (ZipArchiveEntry) in.getNextEntry()) != null) { File zipPath = new File(folder); File destinationFilePath = new File(zipPath, entry.getName()); destinationFilePath.getParentFile().mkdirs(); if (entry.isDirectory()) { continue; } else { out = new FileOutputStream(new File(folder, entry.getName())); IOUtils.copy(in, out); out.close(); } } in.close(); }

private void preprocessObjects(GeoObject[] objects) throws IOException { System.out.println("objects.length " + objects.length); for (int i = 0; i < objects.length; i++) { String fileName = objects[i].getPath(); int dotindex = fileName.lastIndexOf("."); dotindex = dotindex < 0 ? 0 : dotindex; String tmp = dotindex < 1 ? fileName : fileName.substring(0, dotindex + 3) + "w"; System.out.println("i: " + " world filename " + tmp); File worldFile = new File(tmp); if (worldFile.exists()) { BufferedReader worldFileReader = new BufferedReader(new InputStreamReader(new FileInputStream(worldFile))); if (staticDebugOn) debug("b4nextline: "); line = worldFileReader.readLine(); if (staticDebugOn) debug("line: " + line); if (line != null) { line = worldFileReader.readLine(); if (staticDebugOn) debug("line: " + line); tokenizer = new StringTokenizer(line, " \n\t\r\"", false); objects[i].setLon(Double.valueOf(tokenizer.nextToken()).doubleValue()); line = worldFileReader.readLine(); if (staticDebugOn) debug("line: " + line); tokenizer = new StringTokenizer(line, " \n\t\r\"", false); objects[i].setLat(Double.valueOf(tokenizer.nextToken()).doubleValue()); } } File file = new File(objects[i].getPath()); if (file.exists()) { System.out.println("object src file found "); int slashindex = fileName.lastIndexOf(java.io.File.separator); slashindex = slashindex < 0 ? 0 : slashindex; if (slashindex == 0) { slashindex = fileName.lastIndexOf("/"); slashindex = slashindex < 0 ? 0 : slashindex; } tmp = slashindex < 1 ? fileName : fileName.substring(slashindex + 1, fileName.length()); System.out.println("filename " + destinationDirectory + XPlat.fileSep + tmp); objects[i].setPath(tmp); file = new File(fileName); if (file.exists()) { DataInputStream dataIn = new DataInputStream(new BufferedInputStream(new FileInputStream(fileName))); DataOutputStream dataOut = new DataOutputStream(new BufferedOutputStream(new FileOutputStream(destinationDirectory + XPlat.fileSep + tmp))); System.out.println("copying to " + destinationDirectory + XPlat.fileSep + tmp); for (; ; ) { try { dataOut.writeShort(dataIn.readShort()); } catch (EOFException e) { break; } catch (IOException e) { break; } } dataOut.close(); } } } }

private String transferWSDL(String usernameAndPassword) throws WiseConnectionException { String filePath = null; try { URL endpoint = new URL(wsdlURL); HttpURLConnection conn = (HttpURLConnection) endpoint.openConnection(); conn.setDoOutput(false); conn.setDoInput(true); conn.setUseCaches(false); conn.setRequestMethod("GET"); conn.setRequestProperty("Accept", "text/xml,application/xml,application/xhtml+xml,text/html;q=0.9,text/plain;q=0.8,image/png,*/*;q=0.5"); conn.setRequestProperty("Connection", "close"); if (this.password != null) { conn.setRequestProperty("Authorization", "Basic " + (new BASE64Encoder()).encode(usernameAndPassword.getBytes())); } InputStream is = null; if (conn.getResponseCode() == 200) { is = conn.getInputStream(); } else { is = conn.getErrorStream(); InputStreamReader isr = new InputStreamReader(is); StringWriter sw = new StringWriter(); char[] buf = new char[200]; int read = 0; while (read != -1) { read = isr.read(buf); sw.write(buf); } throw new WiseConnectionException("Remote server's response is an error: " + sw.toString()); } File file = new File(tmpDir, new StringBuffer("Wise").append(IDGenerator.nextVal()).append(".xml").toString()); OutputStream fos = new BufferedOutputStream(new FileOutputStream(file)); IOUtils.copyStream(fos, is); fos.close(); is.close(); filePath = file.getPath(); } catch (WiseConnectionException wce) { throw wce; } catch (Exception e) { logger.error("Failed to download wsdl from URL : " + wsdlURL); throw new WiseConnectionException("Wsdl download failed!", e); } return filePath; }

public static String getMD5HashFromString(String message) { String hashword = null; try { MessageDigest md5 = MessageDigest.getInstance("MD5"); md5.update(message.getBytes()); BigInteger hash = new BigInteger(1, md5.digest()); hashword = hash.toString(16); } catch (NoSuchAlgorithmException nsae) { } return hashword; }

public static byte[] gerarHash(String frase) { try { MessageDigest md = MessageDigest.getInstance("SHA-1"); md.update(frase.getBytes()); return md.digest(); } catch (NoSuchAlgorithmException e) { return null; } }

protected void doDownload(S3Bucket bucket, S3Object s3object) throws Exception { String key = s3object.getKey(); key = trimPrefix(key); String[] path = key.split("/"); String fileName = path[path.length - 1]; String dirPath = ""; for (int i = 0; i < path.length - 1; i++) { dirPath += path[i] + "/"; } File outputDir = new File(downloadFileOutputDir + "/" + dirPath); if (outputDir.exists() == false) { outputDir.mkdirs(); } File outputFile = new File(outputDir, fileName); long size = s3object.getContentLength(); if (outputFile.exists() && outputFile.length() == size) { return; } long startTime = System.currentTimeMillis(); log.info("Download start.S3 file=" + s3object.getKey() + " local file=" + outputFile.getAbsolutePath()); FileOutputStream fout = null; S3Object dataObject = null; try { fout = new FileOutputStream(outputFile); dataObject = s3.getObject(bucket, s3object.getKey()); InputStream is = dataObject.getDataInputStream(); IOUtils.copyStream(is, fout); downloadedFileList.add(key); long downloadTime = System.currentTimeMillis() - startTime; log.info("Download complete.Estimete time=" + downloadTime + "ms " + IOUtils.toBPSText(downloadTime, size)); } catch (Exception e) { log.error("Download fail. s3 file=" + key, e); outputFile.delete(); throw e; } finally { IOUtils.closeNoException(fout); if (dataObject != null) { dataObject.closeDataInputStream(); } } }

@Override protected ModelAndView handleRequestInternal(final HttpServletRequest request, final HttpServletResponse response) throws Exception { final String filename = ServletRequestUtils.getRequiredStringParameter(request, "id"); final File file = new File(path, filename + ".html"); logger.debug("Getting static content from: " + file.getPath()); final InputStream is = getServletContext().getResourceAsStream(file.getPath()); OutputStream out = null; if (is != null) { try { out = response.getOutputStream(); IOUtils.copy(is, out); } catch (IOException ioex) { logger.error(ioex); } finally { is.close(); if (out != null) { out.close(); } } } return null; }

public static void copyFile(File dst, File src, boolean append) throws FileNotFoundException, IOException { dst.createNewFile(); FileChannel in = new FileInputStream(src).getChannel(); FileChannel out = new FileOutputStream(dst).getChannel(); long startAt = 0; if (append) startAt = out.size(); in.transferTo(startAt, in.size(), out); out.close(); in.close(); }

private static void copyFile(File in, File out) throws IOException { FileChannel inChannel = new FileInputStream(in).getChannel(); FileChannel outChannel = new FileOutputStream(out).getChannel(); try { inChannel.transferTo(0, inChannel.size(), outChannel); } catch (IOException e) { throw e; } finally { if (inChannel != null) inChannel.close(); if (outChannel != null) outChannel.close(); } }

private String generateUniqueIdMD5(String workgroupIdString, String runIdString) { String passwordUnhashed = workgroupIdString + "-" + runIdString; MessageDigest m = null; try { m = MessageDigest.getInstance("MD5"); } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } m.update(passwordUnhashed.getBytes(), 0, passwordUnhashed.length()); String uniqueIdMD5 = new BigInteger(1, m.digest()).toString(16); return uniqueIdMD5; }

public static FTPClient createConnection(String hostname, int port, char[] username, char[] password, String workingDirectory, FileSystemOptions fileSystemOptions) throws FileSystemException { if (username == null) username = "anonymous".toCharArray(); if (password == null) password = "anonymous".toCharArray(); try { final FTPClient client = new FTPClient(); String key = FtpFileSystemConfigBuilder.getInstance().getEntryParser(fileSystemOptions); if (key != null) { FTPClientConfig config = new FTPClientConfig(key); String serverLanguageCode = FtpFileSystemConfigBuilder.getInstance().getServerLanguageCode(fileSystemOptions); if (serverLanguageCode != null) config.setServerLanguageCode(serverLanguageCode); String defaultDateFormat = FtpFileSystemConfigBuilder.getInstance().getDefaultDateFormat(fileSystemOptions); if (defaultDateFormat != null) config.setDefaultDateFormatStr(defaultDateFormat); String recentDateFormat = FtpFileSystemConfigBuilder.getInstance().getRecentDateFormat(fileSystemOptions); if (recentDateFormat != null) config.setRecentDateFormatStr(recentDateFormat); String serverTimeZoneId = FtpFileSystemConfigBuilder.getInstance().getServerTimeZoneId(fileSystemOptions); if (serverTimeZoneId != null) config.setServerTimeZoneId(serverTimeZoneId); String[] shortMonthNames = FtpFileSystemConfigBuilder.getInstance().getShortMonthNames(fileSystemOptions); if (shortMonthNames != null) { StringBuffer shortMonthNamesStr = new StringBuffer(40); for (int i = 0; i < shortMonthNames.length; i++) { if (shortMonthNamesStr.length() > 0) shortMonthNamesStr.append("|"); shortMonthNamesStr.append(shortMonthNames[i]); } config.setShortMonthNames(shortMonthNamesStr.toString()); } client.configure(config); } FTPFileEntryParserFactory myFactory = FtpFileSystemConfigBuilder.getInstance().getEntryParserFactory(fileSystemOptions); if (myFactory != null) client.setParserFactory(myFactory); try { client.connect(hostname, port); int reply = client.getReplyCode(); if (!FTPReply.isPositiveCompletion(reply)) throw new FileSystemException("vfs.provider.ftp/connect-rejected.error", hostname); if (!client.login(UserAuthenticatorUtils.toString(username), UserAuthenticatorUtils.toString(password))) throw new FileSystemException("vfs.provider.ftp/login.error", new Object[] { hostname, UserAuthenticatorUtils.toString(username) }, null); if (!client.setFileType(FTP.BINARY_FILE_TYPE)) throw new FileSystemException("vfs.provider.ftp/set-binary.error", hostname); Integer dataTimeout = FtpFileSystemConfigBuilder.getInstance().getDataTimeout(fileSystemOptions); if (dataTimeout != null) client.setDataTimeout(dataTimeout.intValue()); try { FtpFileSystemConfigBuilder.getInstance().setHomeDir(fileSystemOptions, client.printWorkingDirectory()); } catch (IOException ex) { throw new FileSystemException("Error obtaining working directory!"); } Boolean userDirIsRoot = FtpFileSystemConfigBuilder.getInstance().getUserDirIsRoot(fileSystemOptions); if (workingDirectory != null && (userDirIsRoot == null || !userDirIsRoot.booleanValue())) if (!client.changeWorkingDirectory(workingDirectory)) throw new FileSystemException("vfs.provider.ftp/change-work-directory.error", workingDirectory); Boolean passiveMode = FtpFileSystemConfigBuilder.getInstance().getPassiveMode(fileSystemOptions); if (passiveMode != null && passiveMode.booleanValue()) client.enterLocalPassiveMode(); } catch (final IOException e) { if (client.isConnected()) client.disconnect(); throw e; } return client; } catch (final Exception exc) { throw new FileSystemException("vfs.provider.ftp/connect.error", new Object[] { hostname }, exc); } }

public static byte[] post(String path, Map<String, String> params, String encode) throws Exception { StringBuilder parambuilder = new StringBuilder(""); if (params != null && !params.isEmpty()) { for (Map.Entry<String, String> entry : params.entrySet()) { parambuilder.append(entry.getKey()).append("=").append(URLEncoder.encode(entry.getValue(), encode)).append("&"); } parambuilder.deleteCharAt(parambuilder.length() - 1); } byte[] data = parambuilder.toString().getBytes(); URL url = new URL(path); HttpURLConnection conn = (HttpURLConnection) url.openConnection(); conn.setDoOutput(true); conn.setUseCaches(false); conn.setConnectTimeout(5 * 1000); conn.setRequestMethod("POST"); conn.setRequestProperty("Accept", "image/gif, image/jpeg, image/pjpeg, image/pjpeg, application/x-shockwave-flash, application/xaml+xml, application/vnd.ms-xpsdocument, application/x-ms-xbap, application/x-ms-application, application/vnd.ms-excel, application/vnd.ms-powerpoint, application/msword, */*"); conn.setRequestProperty("Accept-Language", "zh-CN"); conn.setRequestProperty("User-Agent", "Mozilla/4.0 (compatible; MSIE 8.0; Windows NT 5.2; Trident/4.0; .NET CLR 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.04506.30; .NET CLR 3.0.4506.2152; .NET CLR 3.5.30729)"); conn.setRequestProperty("Content-Type", "application/x-www-form-urlencoded"); conn.setRequestProperty("Content-Length", String.valueOf(data.length)); conn.setRequestProperty("Connection", "Keep-Alive"); DataOutputStream outStream = new DataOutputStream(conn.getOutputStream()); outStream.write(data); outStream.flush(); outStream.close(); if (conn.getResponseCode() == 200) { return StreamTool.readInputStream(conn.getInputStream()); } return null; }

protected void setRankOrder() { this.rankOrder = new int[values.length]; for (int i = 0; i < rankOrder.length; i++) { rankOrder[i] = i; assert (!Double.isNaN(values[i])); } for (int i = rankOrder.length - 1; i >= 0; i--) { boolean swapped = false; for (int j = 0; j < i; j++) if (values[rankOrder[j]] < values[rankOrder[j + 1]]) { int r = rankOrder[j]; rankOrder[j] = rankOrder[j + 1]; rankOrder[j + 1] = r; } } }

private static void readAndRewrite(File inFile, File outFile) throws IOException { ImageInputStream iis = ImageIO.createImageInputStream(new BufferedInputStream(new FileInputStream(inFile))); DcmParser dcmParser = DcmParserFactory.getInstance().newDcmParser(iis); Dataset ds = DcmObjectFactory.getInstance().newDataset(); dcmParser.setDcmHandler(ds.getDcmHandler()); dcmParser.parseDcmFile(null, Tags.PixelData); PixelDataReader pdReader = pdFact.newReader(ds, iis, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); System.out.println("reading " + inFile + "..."); pdReader.readPixelData(false); ImageOutputStream out = ImageIO.createImageOutputStream(new BufferedOutputStream(new FileOutputStream(outFile))); DcmEncodeParam dcmEncParam = DcmEncodeParam.IVR_LE; ds.writeDataset(out, dcmEncParam); ds.writeHeader(out, dcmEncParam, Tags.PixelData, dcmParser.getReadVR(), dcmParser.getReadLength()); System.out.println("writing " + outFile + "..."); PixelDataWriter pdWriter = pdFact.newWriter(pdReader.getPixelDataArray(), false, ds, out, dcmParser.getDcmDecodeParam().byteOrder, dcmParser.getReadVR()); pdWriter.writePixelData(); out.flush(); out.close(); System.out.println("done!"); }

public static Checksum checksum(File file, Checksum checksum) throws IOException { if (file.isDirectory()) { throw new IllegalArgumentException("Checksums can't be computed on directories"); } InputStream in = null; try { in = new CheckedInputStream(new FileInputStream(file), checksum); IOUtils.copy(in, new NullOutputStream()); } finally { IOUtils.closeQuietly(in); } return checksum; }

private static void download(String urlString) throws IOException { URL url = new URL(urlString); url = handleRedirectUrl(url); URLConnection cn = url.openConnection(); Utils.setHeader(cn); long fileLength = cn.getContentLength(); Statics.getInstance().setFileLength(fileLength); long packageLength = fileLength / THREAD_COUNT; long leftLength = fileLength % THREAD_COUNT; String fileName = Utils.decodeURLFileName(url); RandomAccessFile file = new RandomAccessFile(fileName, "rw"); System.out.println("File: " + fileName + ", Size: " + Utils.calSize(fileLength)); CountDownLatch latch = new CountDownLatch(THREAD_COUNT + 1); long pos = 0; for (int i = 0; i < THREAD_COUNT; i++) { long endPos = pos + packageLength; if (leftLength > 0) { endPos++; leftLength--; } new Thread(new DownloadThread(latch, url, file, pos, endPos)).start(); pos = endPos; } new Thread(new MoniterThread(latch)).start(); try { latch.await(); } catch (InterruptedException e) { e.printStackTrace(); } }

private File download(String filename, URL url) { int size = -1; int received = 0; try { fireDownloadStarted(filename); File file = createFile(filename); BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(file)); System.out.println("下载资源：" + filename + ", url=" + url); // BufferedInputStream bis = new // BufferedInputStream(url.openStream()); InputStream bis = url.openStream(); byte[] buf = new byte[1024]; int count = 0; long lastUpdate = 0; size = bis.available(); while ((count = bis.read(buf)) != -1) { bos.write(buf, 0, count); received += count; long now = System.currentTimeMillis(); if (now - lastUpdate > 500) { fireDownloadUpdate(filename, size, received); lastUpdate = now; } } bos.close(); System.out.println("资源下载完毕：" + filename); fireDownloadCompleted(filename); return file; } catch (IOException e) { System.out.println("下载资源失败：" + filename + ", error=" + e.getMessage()); fireDownloadInterrupted(filename); if (!(e instanceof FileNotFoundException)) { e.printStackTrace(); } } return null; }

public static void writeToFile(InputStream input, File file, ProgressListener listener, long length) { OutputStream output = null; try { output = new CountingOutputStream(new FileOutputStream(file), listener, length); IOUtils.copy(input, output); } catch (IOException e) { throw new RuntimeException(e); } finally { IOUtils.closeQuietly(input); IOUtils.closeQuietly(output); } }

public static void unzip2(String strZipFile, String folder) throws IOException, ArchiveException { FileUtil.fileExists(strZipFile, true); final InputStream is = new FileInputStream(strZipFile); ArchiveInputStream in = new ArchiveStreamFactory().createArchiveInputStream("zip", is); ZipArchiveEntry entry = null; OutputStream out = null; while ((entry = (ZipArchiveEntry) in.getNextEntry()) != null) { File zipPath = new File(folder); File destinationFilePath = new File(zipPath, entry.getName()); destinationFilePath.getParentFile().mkdirs(); if (entry.isDirectory()) { continue; } else { out = new FileOutputStream(new File(folder, entry.getName())); IOUtils.copy(in, out); out.close(); } } in.close(); }

public String getMd5CodeOf16(String str) { StringBuffer buf = null; try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(str.getBytes()); byte b[] = md.digest(); int i; buf = new StringBuffer(""); for (int offset = 0; offset < b.length; offset++) { i = b[offset]; if (i < 0) i += 256; if (i < 16) buf.append("0"); buf.append(Integer.toHexString(i)); } } catch (NoSuchAlgorithmException e) { e.printStackTrace(); } finally { return buf.toString().substring(8, 24); } }

public void run() { Pair p = null; try { while ((p = queue.pop()) != null) { GetMethod get = new GetMethod(p.getRemoteUri()); try { get.setFollowRedirects(true); get.setRequestHeader("Mariner-Application", "prerenderer"); get.setRequestHeader("Mariner-DeviceName", deviceName); int iGetResultCode = httpClient.executeMethod(get); if (iGetResultCode != 200) { throw new IOException("Got response code " + iGetResultCode + " for a request for " + p.getRemoteUri()); } InputStream is = get.getResponseBodyAsStream(); File localFile = new File(deviceFile, p.getLocalUri()); localFile.getParentFile().mkdirs(); OutputStream os = new FileOutputStream(localFile); IOUtils.copy(is, os); os.close(); } finally { get.releaseConnection(); } } } catch (Exception ex) { result = ex; } }

public String MD5(String text) throws NoSuchAlgorithmException, UnsupportedEncodingException { MessageDigest md; md = MessageDigest.getInstance("MD5"); byte[] md5hash = new byte[32]; md.update(text.getBytes("iso-8859-1"), 0, text.length()); md5hash = md.digest(); return convertToHex(md5hash); }

public static String generateHash(String value) { MessageDigest md5 = null; try { md5 = MessageDigest.getInstance("MD5"); md5.reset(); md5.update(value.getBytes()); } catch (NoSuchAlgorithmException e) { log.error("Could not find the requested hash method: " + e.getMessage()); } byte[] result = md5.digest(); StringBuffer hexString = new StringBuffer(); for (int i = 0; i < result.length; i++) { hexString.append(Integer.toHexString(0xFF & result[i])); } return hexString.toString(); }

public void testQueryForBinary() throws InvalidNodeTypeDefException, ParseException, Exception { JCRNodeSource source = (JCRNodeSource) resolveSource(BASE_URL + "images/photo.png"); assertNotNull(source); assertEquals(false, source.exists()); OutputStream os = source.getOutputStream(); assertNotNull(os); String content = "foo is a bar"; os.write(content.getBytes()); os.flush(); os.close(); QueryResultSource qResult = (QueryResultSource) resolveSource(BASE_URL + "images?/*[contains(local-name(), 'photo.png')]"); assertNotNull(qResult); Collection results = qResult.getChildren(); assertEquals(1, results.size()); Iterator it = results.iterator(); JCRNodeSource rSrc = (JCRNodeSource) it.next(); InputStream rSrcIn = rSrc.getInputStream(); ByteArrayOutputStream actualOut = new ByteArrayOutputStream(); IOUtils.copy(rSrcIn, actualOut); rSrcIn.close(); assertEquals(content, actualOut.toString()); actualOut.close(); rSrc.delete(); }

private boolean enregistreToi() { PrintWriter lEcrivain; String laDest = "./img_types/" + sonImage; if (!new File("./img_types").exists()) { new File("./img_types").mkdirs(); } try { FileChannel leFicSource = new FileInputStream(sonFichier).getChannel(); FileChannel leFicDest = new FileOutputStream(laDest).getChannel(); leFicSource.transferTo(0, leFicSource.size(), leFicDest); leFicSource.close(); leFicDest.close(); lEcrivain = new PrintWriter(new FileWriter(new File("bundll/types.jay"), true)); lEcrivain.println(sonNom); lEcrivain.println(sonImage); if (sonOptionRadio1.isSelected()) { lEcrivain.println("0:?"); } if (sonOptionRadio2.isSelected()) { lEcrivain.println("1:" + JOptionPane.showInputDialog(null, "Vous avez choisis de rendre ce terrain difficile � franchir.\nVeuillez en indiquer la raison.", "Demande de pr�cision", JOptionPane.INFORMATION_MESSAGE)); } if (sonOptionRadio3.isSelected()) { lEcrivain.println("2:?"); } lEcrivain.close(); return true; } catch (Exception lException) { return false; } }

public void schema(final Row row, TestResults testResults) throws Exception { String urlString = row.text(1); String schemaBase = null; if (row.cellExists(2)) { schemaBase = row.text(2); } try { StreamSource schemaSource; if (urlString.startsWith(CLASS_PREFIX)) { InputStream schema = XmlValidator.class.getClassLoader().getResourceAsStream(urlString.substring(CLASS_PREFIX.length())); schemaSource = new StreamSource(schema); } else { URL url = new URL(urlString); URLConnection urlConnection = url.openConnection(); urlConnection.connect(); InputStream inputStream = urlConnection.getInputStream(); schemaSource = new StreamSource(inputStream); } SchemaFactory factory = SchemaFactory.newInstance(XMLConstants.W3C_XML_SCHEMA_NS_URI); if (schemaBase != null) { DefaultLSResourceResolver resolver = new DefaultLSResourceResolver(schemaBase); factory.setResourceResolver(resolver); } factory.newSchema(new URL(urlString)); Validator validator = factory.newSchema(schemaSource).newValidator(); StreamSource source = new StreamSource(new StringReader(xml)); validator.validate(source); row.pass(testResults); } catch (SAXException e) { Loggers.SERVICE_LOG.warn("schema error", e); throw new FitFailureException(e.getMessage()); } catch (IOException e) { Loggers.SERVICE_LOG.warn("schema error", e); throw new FitFailureException(e.getMessage()); } }

public static String getURLContent(String href) throws BuildException { URL url = null; String content; try { URL context = new URL("file:" + System.getProperty("user.dir") + "/"); url = new URL(context, href); InputStream is = url.openStream(); InputStreamReader isr = new InputStreamReader(is); StringBuffer stringBuffer = new StringBuffer(); char[] buffer = new char[1024]; int len; while ((len = isr.read(buffer, 0, 1024)) > 0) stringBuffer.append(buffer, 0, len); content = stringBuffer.toString(); isr.close(); } catch (Exception ex) { throw new BuildException("Cannot get content of URL " + href + ": " + ex); } return content; }

public void actualizar() throws SQLException, ClassNotFoundException, Exception { Connection conn = null; PreparedStatement ms = null; registroActualizado = false; try { conn = ToolsBD.getConn(); conn.setAutoCommit(false); Date fechaSystem = new Date(); DateFormat aaaammdd = new SimpleDateFormat("yyyyMMdd"); int fzafsis = Integer.parseInt(aaaammdd.format(fechaSystem)); DateFormat hhmmss = new SimpleDateFormat("HHmmss"); DateFormat sss = new SimpleDateFormat("S"); String ss = sss.format(fechaSystem); if (ss.length() > 2) { ss = ss.substring(0, 2); } int fzahsis = Integer.parseInt(hhmmss.format(fechaSystem) + ss); ms = conn.prepareStatement(SENTENCIA_UPDATE); if (fechaOficio != null && !fechaOficio.equals("")) { if (fechaOficio.matches("\\d{8}")) { ms.setInt(1, Integer.parseInt(fechaOficio)); } else { int fzafent = 0; try { fechaTest = dateF.parse(fechaOficio); Calendar cal = Calendar.getInstance(); cal.setTime(fechaTest); DateFormat date1 = new SimpleDateFormat("yyyyMMdd"); fzafent = Integer.parseInt(date1.format(fechaTest)); } catch (Exception e) { } ms.setInt(1, fzafent); } } else { ms.setInt(1, 0); } ms.setString(2, descripcion); ms.setInt(3, Integer.parseInt(anoSalida)); ms.setInt(4, Integer.parseInt(oficinaSalida)); ms.setInt(5, Integer.parseInt(numeroSalida)); ms.setString(6, nulo); ms.setString(7, motivosNulo); ms.setString(8, usuarioNulo); if (fechaNulo != null && !fechaNulo.equals("")) { int fzafent = 0; try { fechaTest = dateF.parse(fechaNulo); Calendar cal = Calendar.getInstance(); cal.setTime(fechaTest); DateFormat date1 = new SimpleDateFormat("yyyyMMdd"); fzafent = Integer.parseInt(date1.format(fechaTest)); } catch (Exception e) { } ms.setInt(9, fzafent); } else { ms.setInt(9, 0); } if (fechaEntrada != null && !fechaEntrada.equals("")) { int fzafent = 0; try { fechaTest = dateF.parse(fechaEntrada); Calendar cal = Calendar.getInstance(); cal.setTime(fechaTest); DateFormat date1 = new SimpleDateFormat("yyyyMMdd"); fzafent = Integer.parseInt(date1.format(fechaTest)); } catch (Exception e) { } ms.setInt(10, fzafent); } else { ms.setInt(10, 0); } ms.setString(11, descartadoEntrada); ms.setString(12, usuarioEntrada); ms.setString(13, motivosDescarteEntrada); ms.setInt(14, anoEntrada != null ? Integer.parseInt(anoEntrada) : 0); ms.setInt(15, oficinaEntrada != null ? Integer.parseInt(oficinaEntrada) : 0); ms.setInt(16, numeroEntrada != null ? Integer.parseInt(numeroEntrada) : 0); ms.setInt(17, anoOficio != null ? Integer.parseInt(anoOficio) : 0); ms.setInt(18, oficinaOficio != null ? Integer.parseInt(oficinaOficio) : 0); ms.setInt(19, numeroOficio != null ? Integer.parseInt(numeroOficio) : 0); int afectados = ms.executeUpdate(); if (afectados > 0) { registroActualizado = true; } else { registroActualizado = false; } conn.commit(); } catch (Exception ex) { System.out.println("Error inesperat, no s'ha desat el registre: " + ex.getMessage()); ex.printStackTrace(); registroActualizado = false; errores.put("", "Error inesperat, no s'ha desat el registre" + ": " + ex.getClass() + "->" + ex.getMessage()); try { if (conn != null) conn.rollback(); } catch (SQLException sqle) { throw new RemoteException("S'ha produït un error i no s'han pogut tornar enrere els canvis efectuats", sqle); } throw new RemoteException("Error inesperat, no s'ha actualitzat la taula de gestió dels ofici de remissió.", ex); } finally { ToolsBD.closeConn(conn, ms, null); } }

public static Builder fromURL(URL url) { try { InputStream in = null; try { in = url.openStream(); ByteArrayOutputStream baos = new ByteArrayOutputStream(); int read = -1; byte[] buf = new byte[4096]; while ((read = in.read(buf)) >= 0) { if (read > 0) { baos.write(buf, 0, read); } } StreamBuilder b = (StreamBuilder) fromMemory(baos.toByteArray()); try { b.setSystemId(url.toURI().toString()); } catch (URISyntaxException use) { b.setSystemId(url.toString()); } return b; } finally { if (in != null) { in.close(); } } } catch (IOException ex) { throw new XMLUnitException(ex); } }

private static ImageIcon tryLoadImageIconFromResource(String filename, String path, int width, int height) { ImageIcon icon = null; try { URL url = cl.getResource(path + pathSeparator + fixFilename(filename)); if (url != null && url.openStream() != null) { icon = new ImageIcon(url); } } catch (Exception e) { } if (icon == null) { return null; } if ((icon.getIconWidth() == width) && (icon.getIconHeight() == height)) { return icon; } else { return new ImageIcon(icon.getImage().getScaledInstance(width, height, java.awt.Image.SCALE_SMOOTH)); } }

private static Long statusSWGCraftTime() { long current = System.currentTimeMillis() / 1000L; if (current < (previousStatusCheck + SWGCraft.STATUS_CHECK_DELAY)) return previousStatusTime; URL url = null; try { synchronized (previousStatusTime) { if (current >= previousStatusCheck + SWGCraft.STATUS_CHECK_DELAY) { url = SWGCraft.getStatusTextURL(); String statusTime = ZReader.read(url.openStream()); previousStatusTime = Long.valueOf(statusTime); previousStatusCheck = current; } return previousStatusTime; } } catch (UnknownHostException e) { SWGCraft.showUnknownHostDialog(url, e); } catch (Throwable e) { SWGAide.printDebug("cmgr", 1, "SWGResourceManager:statusSWGCraftTime:", e.toString()); } return Long.valueOf(0); }

public boolean onStart() { log("Starting up, this may take a minute..."); gui = new ApeAtollGUI(); gui.setVisible(true); while (waitGUI) { sleep(100); } URLConnection url = null; BufferedReader in = null; BufferedWriter out = null; if (checkUpdates) { try { url = new URL("http://www.voltrex.be/rsbot/VoltrexApeAtollVERSION.txt").openConnection(); in = new BufferedReader(new InputStreamReader(url.getInputStream())); if (Double.parseDouble(in.readLine()) > properties.version()) { if (JOptionPane.showConfirmDialog(null, "Update found. Do you want to update?") == 0) { JOptionPane.showMessageDialog(null, "Please choose 'VoltrexApeAtoll.java' in your scripts/sources folder."); JFileChooser fc = new JFileChooser(); if (fc.showOpenDialog(null) == JFileChooser.APPROVE_OPTION) { url = new URL("http://www.voltrex.be/rsbot/VoltrexApeAtoll.java").openConnection(); in = new BufferedReader(new InputStreamReader(url.getInputStream())); out = new BufferedWriter(new FileWriter(fc.getSelectedFile().getPath())); String inp; while ((inp = in.readLine()) != null) { out.write(inp); out.newLine(); out.flush(); } log("Script successfully downloaded. Please recompile."); return false; } else log("Update canceled"); } else log("Update canceled"); } else log("You have the latest version."); if (in != null) in.close(); if (out != null) out.close(); } catch (IOException e) { log("Problem getting version. Please report this bug!"); } } try { BKG = ImageIO.read(new URL("http://i54.tinypic.com/2egcfaw.jpg")); } catch (final java.io.IOException e) { e.printStackTrace(); } try { final URL cursorURL = new URL("http://imgur.com/i7nMG.png"); final URL cursor80URL = new URL("http://imgur.com/8k9op.png"); normal = ImageIO.read(cursorURL); clicked = ImageIO.read(cursor80URL); } catch (MalformedURLException e) { log.info("Unable to buffer cursor."); } catch (IOException e) { log.info("Unable to open cursor image."); } scriptStartTime = System.currentTimeMillis(); mouse.setSpeed(MouseSpeed); camera.setPitch(true); log("You are using Voltrex Ape Atoll agility course."); return true; }

private static byte[] gerarHash(String frase) { try { MessageDigest md = MessageDigest.getInstance("MD5"); md.update(frase.getBytes()); return md.digest(); } catch (Exception e) { return null; } }

public static void main(String[] args) throws Exception { TripleDES tdes = new TripleDES(); StreamBlockReader reader = new StreamBlockReader(new FileInputStream("D:\\test.txt")); StreamBlockWriter writer = new StreamBlockWriter(new FileOutputStream("D:\\testTDESENC.txt")); SingleKey key = new SingleKey(new Block(128), ""); key = new SingleKey(new Block("01011101110000101001100111001011101000001110111101001001101101101101100000011101100100110000101100001110000001111101001101001101"), ""); Mode mode = new ECBTripleDESMode(tdes); tdes.encrypt(reader, writer, key, mode); }

private FileInputStream getPackageStream(String archivePath) throws IOException, PackageManagerException { final int lastSlashInName = filename.lastIndexOf("/"); final String newFileName = filename.substring(lastSlashInName); File packageFile = new File((new StringBuilder()).append(archivePath).append(newFileName).toString()); if (null != packageFile) return new FileInputStream(packageFile); if (null != packageURL) { final InputStream urlStream = new ConnectToServer(null).getInputStream(packageURL); packageFile = new File((new StringBuilder()).append(getName()).append(".deb").toString()); final OutputStream fileStream = new FileOutputStream(packageFile); final byte buffer[] = new byte[10240]; for (int read = 0; (read = urlStream.read(buffer)) > 0; ) fileStream.write(buffer, 0, read); urlStream.close(); fileStream.close(); return new FileInputStream(packageFile); } else { final String errorMessage = PreferenceStoreHolder.getPreferenceStoreByName("Screen").getPreferenceAsString("package.getPackageStream.packageURLIsNull", "No entry found for package.getPackageStream.packageURLIsNull"); if (pm != null) { pm.addWarning(errorMessage); logger.error(errorMessage); } else logger.error(errorMessage); throw new FileNotFoundException(); } }

public void writeTo(File f) throws IOException { if (state != STATE_OK) throw new IllegalStateException("Upload failed"); if (tempLocation == null) throw new IllegalStateException("File already saved"); if (f.isDirectory()) f = new File(f, filename); FileInputStream fis = new FileInputStream(tempLocation); FileOutputStream fos = new FileOutputStream(f); byte[] buf = new byte[BUFFER_SIZE]; try { int i = 0; while ((i = fis.read(buf)) != -1) fos.write(buf, 0, i); } finally { deleteTemporaryFile(); fis.close(); fos.close(); } }

public static Boolean decompress(File source, File destination) { FileOutputStream outputStream; ZipInputStream inputStream; try { outputStream = null; inputStream = new ZipInputStream(new FileInputStream(source)); int read; byte buffer[] = new byte[BUFFER_SIZE]; ZipEntry zipEntry; while ((zipEntry = inputStream.getNextEntry()) != null) { if (zipEntry.isDirectory()) new File(destination, zipEntry.getName()).mkdirs(); else { File fileEntry = new File(destination, zipEntry.getName()); fileEntry.getParentFile().mkdirs(); outputStream = new FileOutputStream(fileEntry); while ((read = inputStream.read(buffer, 0, BUFFER_SIZE)) != -1) { outputStream.write(buffer, 0, read); } outputStream.flush(); outputStream.close(); } } inputStream.close(); } catch (Exception oException) { return false; } return true; }

public BufferedWriter createOutputStream(String inFile, String outFile) throws IOException { int k_blockSize = 1024; int byteCount; char[] buf = new char[k_blockSize]; File ofp = new File(outFile); ZipOutputStream zos = new ZipOutputStream(new FileOutputStream(ofp)); zos.setMethod(ZipOutputStream.DEFLATED); OutputStreamWriter osw = new OutputStreamWriter(zos, "ISO-8859-1"); BufferedWriter bw = new BufferedWriter(osw); ZipEntry zot = null; File ifp = new File(inFile); ZipInputStream zis = new ZipInputStream(new FileInputStream(ifp)); InputStreamReader isr = new InputStreamReader(zis, "ISO-8859-1"); BufferedReader br = new BufferedReader(isr); ZipEntry zit = null; while ((zit = zis.getNextEntry()) != null) { if (zit.getName().equals("content.xml")) { continue; } zot = new ZipEntry(zit.getName()); zos.putNextEntry(zot); while ((byteCount = br.read(buf, 0, k_blockSize)) >= 0) bw.write(buf, 0, byteCount); bw.flush(); zos.closeEntry(); } zos.putNextEntry(new ZipEntry("content.xml")); bw.flush(); osw = new OutputStreamWriter(zos, "UTF8"); bw = new BufferedWriter(osw); return bw; }

@Override protected ActionForward executeAction(ActionMapping mapping, ActionForm form, User user, HttpServletRequest request, HttpServletResponse response) throws Exception { long resourceId = ServletRequestUtils.getLongParameter(request, "resourceId", 0L); String attributeIdentifier = request.getParameter("identifier"); if (resourceId != 0L && StringUtils.hasText(attributeIdentifier)) { try { BinaryAttribute binaryAttribute = resourceManager.readAttribute(resourceId, attributeIdentifier, user); response.addHeader("Content-Disposition", "attachment; filename=\"" + binaryAttribute.getName() + '"'); String contentType = binaryAttribute.getContentType(); if (contentType != null) { if ("application/x-zip-compressed".equalsIgnoreCase(contentType)) { response.setContentType("application/octet-stream"); } else { response.setContentType(contentType); } } else { response.setContentType("application/octet-stream"); } IOUtils.copy(binaryAttribute.getInputStream(), response.getOutputStream()); return null; } catch (DataRetrievalFailureException e) { addGlobalError(request, "errors.notFound"); } catch (Exception e) { addGlobalError(request, e); } } return mapping.getInputForward(); }