File size: 7,558 Bytes
817e9cb 227f71d |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 |
##fileformat=VCFv4.2
##fileDate=20241012
##source=OncoGAN-v0.1
##reference=hg19
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=MS,Number=A,Type=String,Description="Mutation type or mutational signature assigned to each mutation. Available options are: SBS (single base substitution signature), DNP (dinucleotide polymorphism), TNP (trinucleotide polymorphism), DEL (deletion), INS (insertion), driver* (driver mutation sampled from real donors)">
#CHROM POS ID REF ALT QUAL FILTER INFO
1 30214003 sim22 C T . . AF=0.18;MS=SBS1
1 98812331 sim22 A G . . AF=0.59;MS=SBS5
1 102621630 sim22 C A . . AF=0.46;MS=SBS5
1 105849872 sim22 C T . . AF=0.13;MS=SBS5
1 117283502 sim22 G A . . AF=0.29;MS=SBS1
1 119858971 sim22 C T . . AF=0.25;MS=SBS1
1 165111203 sim22 C A . . AF=0.59;MS=SBS5
1 171588944 sim22 CTA C . . AF=0.34;MS=DEL
1 180616763 sim22 C T . . AF=0.05;MS=SBS1
1 186917291 sim22 G A . . AF=0.56;MS=SBS1
1 193794725 sim22 C G . . AF=0.24;MS=SBS5
1 236991092 sim22 G A . . AF=0.33;MS=SBS5
2 14876884 sim22 T C . . AF=0.33;MS=SBS5
2 20079078 sim22 G T . . AF=0.1;MS=SBS5
2 35509809 sim22 T A . . AF=0.14;MS=SBS5
2 67286919 sim22 G A . . AF=0.21;MS=SBS1
2 90469021 sim22 T A . . AF=0.05;MS=SBS5
2 127136327 sim22 G A . . AF=0.09;MS=SBS5
2 128342274 sim22 C T . . AF=0.29;MS=SBS5
2 131071421 sim22 C A . . AF=0.34;MS=SBS5
2 141982903 sim22 G T . . AF=0.69;MS=SBS5
2 145410786 sim22 C G . . AF=0.22;MS=SBS5
2 149933436 sim22 T G . . AF=0.4;MS=SBS5
2 154191903 sim22 G A . . AF=0.24;MS=SBS1
2 166076970 sim22 C A . . AF=0.33;MS=SBS5
2 196259838 sim22 G A . . AF=0.08;MS=SBS5
3 18533528 sim22 A AT . . AF=0.08;MS=INS
3 44018671 sim22 G A . . AF=0.31;MS=SBS5
3 79211721 sim22 G A . . AF=0.15;MS=SBS5
3 101389896 sim22 G A . . AF=0.08;MS=SBS1
3 105284183 sim22 A G . . AF=0.16;MS=SBS5
3 150517094 sim22 C G . . AF=0.42;MS=SBS5
3 178697526 sim22 A G . . AF=0.27;MS=SBS5
3 179043219 sim22 G C . . AF=0.19;MS=SBS5
3 185771028 sim22 T TA . . AF=0.09;MS=INS
3 187900796 sim22 A G . . AF=0.08;MS=SBS5
3 195259876 sim22 C T . . AF=0.42;MS=SBS1
4 19667549 sim22 G T . . AF=0.35;MS=SBS5
4 29850374 sim22 C T . . AF=0.33;MS=SBS1
4 30792898 sim22 A G . . AF=0.02;MS=SBS5
4 32188383 sim22 C T . . AF=0.36;MS=SBS5
4 49628180 sim22 A G . . AF=0.38;MS=SBS5
4 61380208 sim22 G A . . AF=0.4;MS=SBS1
4 72033650 sim22 T G . . AF=0.14;MS=SBS5
4 105643101 sim22 C A . . AF=0.41;MS=SBS5
4 128732068 sim22 TT T . . AF=0.3;MS=DEL
4 140360442 sim22 C T . . AF=0.31;MS=SBS5
4 145415721 sim22 T A . . AF=0.04;MS=SBS1
4 146792045 sim22 G C . . AF=0.15;MS=SBS5
4 163219871 sim22 T C . . AF=0.09;MS=SBS5
4 177145999 sim22 C A . . AF=0.08;MS=SBS5
5 25164414 sim22 G C . . AF=0.08;MS=SBS5
5 28851874 sim22 G A . . AF=0.21;MS=SBS1
5 46396503 sim22 G T . . AF=0.35;MS=SBS5
5 51769108 sim22 G A . . AF=0.13;MS=SBS5
5 53153540 sim22 A T . . AF=0.24;MS=SBS5
5 62267530 sim22 C T . . AF=0.15;MS=SBS5
5 81011256 sim22 AA A . . AF=0.37;MS=DEL
5 89523061 sim22 C G . . AF=0.38;MS=SBS5
5 93058388 sim22 A T . . AF=0.08;MS=SBS5
5 96060195 sim22 A G . . AF=0.11;MS=SBS5
5 111071729 sim22 C T . . AF=0.44;MS=SBS1
5 137626679 sim22 G A . . AF=0.08;MS=SBS5
5 162462863 sim22 G A . . AF=0.16;MS=SBS1
5 179438402 sim22 A T . . AF=0.14;MS=SBS5
6 26276594 sim22 C A . . AF=0.4;MS=SBS5
6 76674871 sim22 A G . . AF=0.3;MS=SBS5
6 80699369 sim22 A C . . AF=0.07;MS=SBS5
6 95589407 sim22 C T . . AF=0.21;MS=SBS1
6 134735678 sim22 A G . . AF=0.33;MS=SBS5
6 158341927 sim22 C A . . AF=0.28;MS=SBS5
7 1944664 sim22 C A . . AF=0.19;MS=SBS5
7 2827668 sim22 AATCCCAGCTG A . . AF=0.53;MS=DEL
7 54291696 sim22 G A . . AF=0.47;MS=SBS1
7 80485145 sim22 G A . . AF=0.06;MS=SBS5
7 81593998 sim22 G T . . AF=0.28;MS=SBS5
7 83692214 sim22 C G . . AF=0.2;MS=SBS5
7 90798446 sim22 C G . . AF=0.12;MS=SBS5
7 97712025 sim22 G T . . AF=0.15;MS=SBS5
7 98384907 sim22 T C . . AF=0.13;MS=SBS5
7 111098994 sim22 G T . . AF=0.14;MS=SBS5
7 128609096 sim22 C T . . AF=0.17;MS=SBS5
7 140445617 sim22 C T . . AF=0.39;MS=driver_BRAF_Intron
8 28173993 sim22 G A . . AF=0.1;MS=SBS1
8 39138127 sim22 C T . . AF=0.08;MS=SBS5
8 48680662 sim22 G A . . AF=0.08;MS=SBS1
8 55968931 sim22 G A . . AF=0.23;MS=SBS1
8 71924298 sim22 GGAAATTG G . . AF=0.14;MS=DEL
8 123765298 sim22 C A . . AF=0.19;MS=SBS1
8 125245643 sim22 G A . . AF=0.34;MS=SBS5
9 26214754 sim22 T C . . AF=0.29;MS=SBS5
9 28364683 sim22 G A . . AF=0.1;MS=SBS1
9 30130596 sim22 C CC . . AF=0.51;MS=INS
9 77586291 sim22 C T . . AF=0.24;MS=SBS5
9 103783331 sim22 A T . . AF=0.34;MS=SBS5
9 119614416 sim22 G A . . AF=0.32;MS=SBS5
9 136702648 sim22 G A . . AF=0.11;MS=SBS1
10 6703062 sim22 G T . . AF=0.23;MS=SBS5
10 9455952 sim22 T G . . AF=0.34;MS=SBS5
10 73042808 sim22 C T . . AF=0.32;MS=SBS1
10 92721685 sim22 C T . . AF=0.17;MS=SBS5
10 97608303 sim22 G A . . AF=0.34;MS=SBS5
10 107529920 sim22 G A . . AF=0.33;MS=SBS1
10 115418365 sim22 C T . . AF=0.12;MS=SBS1
11 8651179 sim22 A G . . AF=0.36;MS=SBS5
11 11875041 sim22 G A . . AF=0.37;MS=SBS1
11 16733439 sim22 C T . . AF=0.06;MS=SBS5
11 19360492 sim22 A C . . AF=0.27;MS=SBS5
11 87920883 sim22 C T . . AF=0.12;MS=SBS5
11 95854849 sim22 G T . . AF=0.4;MS=SBS5
12 19847315 sim22 A G . . AF=0.0;MS=SBS5
12 73343211 sim22 A G . . AF=0.18;MS=SBS5
12 76027922 sim22 C T . . AF=0.17;MS=SBS5
12 83960390 sim22 G A . . AF=0.09;MS=SBS5
12 89568141 sim22 A C . . AF=0.08;MS=SBS5
12 93012854 sim22 T A . . AF=0.08;MS=SBS5
12 116454996 sim22 G A . . AF=0.09;MS=SBS5
12 117046861 sim22 G A . . AF=0.18;MS=SBS1
13 36455718 sim22 G C . . AF=0.09;MS=SBS5
13 55534809 sim22 T G . . AF=0.11;MS=SBS5
13 82722295 sim22 C T . . AF=0.08;MS=SBS5
14 60673586 sim22 G T . . AF=0.41;MS=SBS5
15 20055991 sim22 C T . . AF=0.13;MS=SBS5
15 23691636 sim22 T C . . AF=0.11;MS=SBS5
15 51919410 sim22 T C . . AF=0.43;MS=SBS5
15 65296943 sim22 C T . . AF=0.12;MS=SBS1
15 67681621 sim22 C T . . AF=0.13;MS=SBS5
15 83369543 sim22 A G . . AF=0.07;MS=SBS5
16 32560539 sim22 C A . . AF=0.37;MS=SBS5
16 33792046 sim22 T C . . AF=0.12;MS=SBS5
16 34859861 sim22 G C . . AF=0.3;MS=SBS5
16 52303394 sim22 G A . . AF=0.1;MS=SBS5
17 69962741 sim22 G A . . AF=0.3;MS=SBS1
18 3248030 sim22 T C . . AF=0.14;MS=SBS5
18 5741890 sim22 G A . . AF=0.21;MS=SBS5
18 35223579 sim22 A T . . AF=0.41;MS=SBS5
19 33671988 sim22 C T . . AF=0.34;MS=SBS1
21 25275554 sim22 G T . . AF=0.07;MS=SBS5
22 33180665 sim22 G A . . AF=0.4;MS=SBS5
22 37107907 sim22 G A . . AF=0.32;MS=SBS1
X 7931858 sim22 G A . . AF=0.26;MS=SBS1
X 9960748 sim22 C T . . AF=0.24;MS=SBS1
X 32998101 sim22 C A . . AF=0.31;MS=SBS5
X 39420621 sim22 G A . . AF=0.5;MS=SBS1
X 44720207 sim22 C T . . AF=0.01;MS=SBS1
X 47639625 sim22 C T . . AF=0.1;MS=SBS5
X 53866885 sim22 T C . . AF=0.05;MS=SBS5
X 63196290 sim22 G C . . AF=0.11;MS=SBS5
X 64660121 sim22 A G . . AF=0.33;MS=SBS1
X 66197419 sim22 G A . . AF=0.09;MS=SBS5
X 66465970 sim22 G A . . AF=0.64;MS=SBS5
X 68273596 sim22 C G . . AF=0.32;MS=SBS5
X 70870223 sim22 CA C . . AF=0.16;MS=DEL
X 77744062 sim22 T A . . AF=0.09;MS=SBS5
X 96672817 sim22 C A . . AF=0.52;MS=SBS1
X 98899030 sim22 C T . . AF=0.36;MS=SBS5
X 98985421 sim22 TT T . . AF=0.09;MS=DEL
X 105499006 sim22 A T . . AF=0.3;MS=SBS5
X 108567541 sim22 T C . . AF=0.09;MS=SBS5
X 114703460 sim22 C T . . AF=0.14;MS=SBS1
X 118188047 sim22 G A . . AF=0.25;MS=SBS5
X 119320831 sim22 C T . . AF=0.09;MS=SBS5
X 124121467 sim22 G A . . AF=0.21;MS=SBS1
X 140515497 sim22 A T . . AF=0.48;MS=SBS5
X 143749880 sim22 C T . . AF=0.41;MS=SBS5
X 144746503 sim22 T C . . AF=0.43;MS=SBS5
X 146394656 sim22 G A . . AF=0.12;MS=SBS5
X 147271441 sim22 A G . . AF=0.09;MS=SBS5
X 151407362 sim22 CTTCA C . . AF=0.11;MS=DEL
|