WIESP2022-NER / scoring-scripts /compute_seqeval.py
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from datasets import load_metric
from ast import literal_eval
def compute_seqeval(references_dataset, predictions_dataset, ref_col='ner_tags', pred_col='pred_ner_tags'):
# computes the seqeval scores
# sort by id
references_dataset = references_dataset.sort('unique_id')
predictions_dataset = predictions_dataset.sort('unique_id')
# load the huggingface metric function
seqeval = load_metric('seqeval')
# check that tokens match
assert(references_dataset['tokens']==predictions_dataset['tokens'])
# ensure IOB2?
# compute scores
seqeval_results = seqeval.compute(predictions = predictions_dataset[pred_col],
references = references_dataset[ref_col],
scheme = 'IOB2',
suffix = False,
)
# change all values to regular (not numpy) floats (otherwise cannot be serialized to json)
seqeval_results = literal_eval(str(seqeval_results))
return(seqeval_results)