Datasets:
Tasks:
Token Classification
Modalities:
Text
Sub-tasks:
named-entity-recognition
Languages:
Spanish
Size:
10K - 100K
License:
Update README.md
Browse files
README.md
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- token-classification
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task_ids:
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- named-entity-recognition
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- cc-by-4-0
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# CANTEMIST
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## Dataset Description
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### Dataset Summary
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Collection of 1301 oncological clinical case reports written in Spanish, with tumor morphology mentions manually annotated and mapped by clinical experts to a controlled terminology. Every tumor morphology mention is linked to an eCIE-O code (the Spanish equivalent of ICD-O).
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The training subset contains 501 documents, the development subsets 500, and the test subset 300. The original dataset is distributed in [Brat](https://brat.nlplab.org/standoff.html) format.
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This dataset was designed for the CANcer TExt Mining Shared Task, sponsored by [Plan
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For further information, please visit [the official website](https://temu.bsc.es/cantemist/).
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## Digital Object Identifier (DOI) and access to dataset files
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https://zenodo.org/record/3978041
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### Supported Tasks
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Named Entity Recognition
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### Languages
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### Directory Structure
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### Data Splits
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## Dataset Creation
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No personal or sensitive information included.
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##
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### Dataset
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###
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```bibtex
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@article{
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title={Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results.},
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author={Miranda-Escalada, Antonio and Farr{\'e}, Eul{\`a}lia and Krallinger, Martin},
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journal={IberLEF@ SEPLN},
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}
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```
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### Funding
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This work was funded by the Spanish State Secretariat for Digitalization and Artificial Intelligence (SEDIA) within the framework of the Plan-TL.
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- token-classification
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task_ids:
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- named-entity-recognition
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---
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# CANTEMIST
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## Dataset Description
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Manually classified collection of Spanish oncological clinical case reports.
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- **Homepage:** [zenodo](https://zenodo.org/record/3978041)
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- **Paper:** [Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results](https://www.researchgate.net/profile/Antonio-Miranda-Escalada-2/publication/352786464_Named_Entity_Recognition_Concept_Normalization_and_Clinical_Coding_Overview_of_the_Cantemist_Track_for_Cancer_Text_Mining_in_Spanish_Corpus_Guidelines_Methods_and_Results/links/60d98a3b458515d6fbe382d8/Named-Entity-Recognition-Concept-Normalization-and-Clinical-Coding-Overview-of-the-Cantemist-Track-for-Cancer-Text-Mining-in-Spanish-Corpus-Guidelines-Methods-and-Results.pdf)
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- **Point of Contact:** encargo-pln-life@bsc.es
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### Dataset Summary
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Collection of 1301 oncological clinical case reports written in Spanish, with tumor morphology mentions manually annotated and mapped by clinical experts to a controlled terminology. Every tumor morphology mention is linked to an eCIE-O code (the Spanish equivalent of ICD-O).
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The training subset contains 501 documents, the development subsets 500, and the test subset 300. The original dataset is distributed in [Brat](https://brat.nlplab.org/standoff.html) format.
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This dataset was designed for the CANcer TExt Mining Shared Task, sponsored by [Plan-TL](https://plantl.mineco.gob.es/Paginas/index.aspx).
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For further information, please visit [the official website](https://temu.bsc.es/cantemist/).
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### Supported Tasks
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Named Entity Recognition (NER)
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### Languages
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- Spanish (es)
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### Directory Structure
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### Data Splits
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| Split | Size |
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| ------------- | ------------- |
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| `train` | 19,397 |
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| `dev` | 18,165 |
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| `test` | 11,168 |
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## Dataset Creation
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No personal or sensitive information included.
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## Considerations for Using the Data
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### Social Impact of Dataset
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This corpus contributes to the development of medical language models in Spanish.
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### Discussion of Biases
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Not applicable.
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## Additional Information
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### Dataset Curators
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The Text Mining Unit from Barcelona Supercomputing Center.
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### Citation Information
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```bibtex
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@article{cantemist,
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title={Named Entity Recognition, Concept Normalization and Clinical Coding: Overview of the Cantemist Track for Cancer Text Mining in Spanish, Corpus, Guidelines, Methods and Results.},
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author={Miranda-Escalada, Antonio and Farr{\'e}, Eul{\`a}lia and Krallinger, Martin},
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journal={IberLEF@ SEPLN},
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}
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```
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### Contact Information
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For further information, send an email to encargo-pln-life@bsc.es.
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### Funding
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This work was funded by the Spanish State Secretariat for Digitalization and Artificial Intelligence (SEDIA) within the framework of the Plan-TL.
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