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license: gpl-3.0
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This repository contains the dataset used in our [work](https://github.com/HemaxiN/3DVesselSegmentation).
* masks: contains the 2D segmentation masks;
* stl: contains the 3D masks obtained using [PolNet](https://github.com/mobernabeu/polnet);
* **Dataset 1**:
| **Image** | **Size (X×Y×Z)** | **Train/Test** <br> **Split** |
| :--------------: | :--------------: | :-----------------------------: |
| PBS_new_ret1 | 5409×2979×31 | Train |
| PBS_new_ret1b | 3375×4599×56 | Test |
| PBS_ret1-02 | 6237×3384×38 | Test |
| PBS_ret4 | 5013×2979×43 | Test |
| sFLT1_ret1 | 4617×5418×35 | Train |
| sFLT1_ret4 | 4365×3978×73 | Test |
| sFLT1_ret5 | 4365×3600×66 | Test |
| VEGF_ret1 | 2979×4599×42 | Train |
| VEGF_ret1b | 5319×4878×61 | Test |
| VEGF_ret3 | 5427×4194×46 | Test |
| VEGF_ret7 | 5013×4194×38 | Test |
| AngII_ret1 | 6273×3780×33 | Train |
| AngII_ret2 | 4851×5571×42 | Test |
| AngII_retina_5 | 4838×5561×39 | Test |
* **Datasets 2, 3 and 4**:
| | **Image** | **Size (X×Y×Z)** |
| :------------- | :------------------------------ | :--------------- |
| **Dataset 2** | Captopril_new_Ret_1 | 4212×5427×35 |
| | Captopril_new_Ret_2 | 4194×5013×34 |
| | Captopril_new_Ret_3 | 4599×3789×36 |
| | Captopril_ret4 | 3206×3972×37 |
| | Captopril_ret5_2 | 3204×4365×54 |
| | Captopril_ret6 | 3600×4365×60 |
| | RGDS_2 | 3553×4000×67 |
| | RGDS_3 | 2258×3997×42 |
| | RGDS_4 | 3555×4428×48 |
| **Dataset 3** | FLIJ7_TG_stiching_1 | 4590×2160×27 |
| | FLIJ7_TG_stiching_2ndExp_1 | 3384×5427×35 |
| | FLIJ8_WT_stiching_2ndExp_1 | 4617×5427×35 |
| | FLIJ9_TG_stiching_1 | 2709×5733×41 |
| | FLIJ9_TG_stiching_2ndExp_1 | 3402×5445×35 |
| | FLIO1a_TG_stiching_2ndExp_2 | 3388×2969×32 |
| | FLIO1b_TG_stiching_2ndExp_1 | 3783×3375×43 |
| | FLIO4_TG_stiching_2ndExp_1 | 3378×3787×28 |
| | FLIO5_TG_stiching_2ndExp_1 | 5004×3798×27 |
| | FLIO6_TG_stiching_1 | 4428×2700×40 |
| | FLIO6_TG_stiching_2 | 4203×4212×31 |
| | FLIO6_TG_stiching_3 | 4608×5022×44 |
| | FLIO8_TG_stiching_1 | 5004×3798×38 |
| | FLIP1_TG_stiching_1 | 4203×1764×23 |
| | FLIP1_TG_stiching_1Exp_1 | 1954×4094×41 |
| | FLIP1_TG_stiching_1Exp_2 | 3384×4815×34 |
| | FLIP1_TG_stiching_1Exp_3 | 4815×3033×30 |
| | FLIP1_TG_stiching_2 | 4608×5022×40 |
| | FLIP5_WT_stiching_2ndExp_1 | 2565×4608×30 |
| **Dataset 4** | YES_retinas_h_KO4_C1 | 5632×6656×36 |
| | YES_retinas_b_WT2_C1 | 4608×4608×24 |
| | YES_retinas_a_WT1_C1 | 4608×5632×20 |
| | YES_retinas_f_KO2_C1 | 4608×5632×36 |
| | YES_retinas_c_WT3_C1 | 4608×5632×24 |
| | YES_retinas_g_KO3_C1 | 4608×4608×28 |
| | YES_retinas_e_KO1_C1 | 4608×4608×32 | |