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ctheodoris
/
Geneformer
like
229
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
Model card
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refs/pr/304
Geneformer
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15 contributors
History:
121 commits
hchen725
Get the gene keys and gene list keys from the token dictionary instead of medians
faab0d7
verified
about 1 year ago
docs
add readthedocs link to model card
over 1 year ago
examples
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
over 1 year ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy
almost 2 years ago
geneformer-12L-30M
Upload 12 layer Geneformer model
almost 2 years ago
geneformer
Get the gene keys and gene list keys from the token dictionary instead of medians
about 1 year ago
.gitattributes
1.3 kB
Adding `safetensors` variant of this model (#209)
over 1 year ago
.gitignore
3.08 kB
Add gitignore file
almost 2 years ago
.pre-commit-config.yaml
737 Bytes
Add pre-commit config
over 1 year ago
.readthedocs.yaml
396 Bytes
update readthedocs.yaml
over 1 year ago
MANIFEST.in
127 Bytes
Fixes to stats and adding gene dict attempt number 2 (#13)
almost 2 years ago
README.md
6.87 kB
add readthedocs link to model card
over 1 year ago
config.json
565 Bytes
upload Geneformer 6L-30M config
about 3 years ago
model.safetensors
41.2 MB
LFS
Adding `safetensors` variant of this model (#209)
over 1 year ago
pytorch_model.bin
pickle
Detected Pickle imports (4)
"torch._utils._rebuild_tensor_v2"
,
"torch.FloatStorage"
,
"torch.LongStorage"
,
"collections.OrderedDict"
What is a pickle import?
41.2 MB
LFS
upload Geneformer 6L-30M
about 3 years ago
requirements.txt
281 Bytes
update dependencies, reinstate compatibility with python<3.9 with typing for List
over 1 year ago
setup.py
972 Bytes
update dependencies, reinstate compatibility with python<3.9 with typing for List
over 1 year ago
training_args.bin
pickle
Detected Pickle imports (4)
"transformers.trainer_utils.IntervalStrategy"
,
"transformers.trainer_utils.SchedulerType"
,
"transformers.training_args.TrainingArguments"
,
"torch.device"
How to fix it?
2.61 kB
LFS
upload training args for Geneformer 6L-30M
about 3 years ago
