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ctheodoris
/
Geneformer
like
160
Fill-Mask
Transformers
PyTorch
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
348
Train
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Use this model
f0b6641
Geneformer
/
geneformer
13 contributors
History:
23 commits
Christina Theodoris
Add function to create remainder emb for in silico overexpression batch
feeecd0
12 months ago
__init__.py
518 Bytes
Subclass collator for cell classification
about 1 year ago
collator_for_classification.py
29.8 kB
Subclass collator for cell classification
about 1 year ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
over 1 year ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
about 1 year ago
in_silico_perturber.py
40.2 kB
Add function to create remainder emb for in silico overexpression batch
12 months ago
in_silico_perturber_stats.py
23.3 kB
Add mixture model option for gene-gene interaction stats
12 months ago
pretrainer.py
37 kB
Update pretrainer for transformers==4.28.0
about 1 year ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
about 1 year ago
tokenizer.py
8.43 kB
Add further explanation regarding input file format for transcriptome tokenizer
12 months ago