Hugging Face
Models
Datasets
Spaces
Posts
Docs
Solutions
Pricing
Log In
Sign Up
ctheodoris
/
Geneformer
like
174
Fill-Mask
Transformers
PyTorch
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
379
Train
Deploy
Use this model
b925dcc
Geneformer
/
examples
13 contributors
History:
8 commits
Christina Theodoris
Update pretrainer for transformers==4.28.0
b925dcc
about 1 year ago
example_input_files
Add example input labels for distinguishing bivalent promoters.
about 1 year ago
cell_classification.ipynb
95.8 kB
Add data collator for gene classification and example for gene classification
almost 2 years ago
gene_classification.ipynb
167 kB
Add data collator for gene classification and example for gene classification
almost 2 years ago
hyperparam_optimiz_for_disease_classifier.py
6.77 kB
Add example for hyperparameter optimization for disease classifier
over 1 year ago
in_silico_perturbation.ipynb
3.37 kB
Add in silico perturbation example notebook.
about 1 year ago
pretrain_geneformer_w_deepspeed.py
4.97 kB
Update pretrainer for transformers==4.28.0
about 1 year ago