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ctheodoris
/
Geneformer
like
181
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
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acd253c
Geneformer
/
examples
13 contributors
History:
24 commits
Christina Theodoris
Update isp to allow modeling single perturbation in multiple cells as batches
acd253c
about 1 year ago
pretraining_new_model
Update links including unsorted example lengths file
about 1 year ago
cell_classification.ipynb
96.1 kB
Add note to recommend tuning hyperparameters for downstream applications
about 1 year ago
gene_classification.ipynb
168 kB
Add note to recommend tuning hyperparameters for downstream applications
about 1 year ago
hyperparam_optimiz_for_disease_classifier.py
6.78 kB
Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets
about 1 year ago
in_silico_perturbation.ipynb
3.44 kB
Update isp to allow modeling single perturbation in multiple cells as batches
about 1 year ago
tokenizing_scRNAseq_data.ipynb
3.25 kB
Add instructions to convert gene annotations w/ Ensembl Biomart
about 1 year ago