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Geneformer

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Geneformer / examples

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15 contributors

History: 23 commits

Christina Theodoris

Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets

45b9d69 almost 2 years ago

pretraining_new_model
Update links including unsorted example lengths file almost 2 years ago
cell_classification.ipynb

96.1 kB

Add note to recommend tuning hyperparameters for downstream applications almost 2 years ago
gene_classification.ipynb

168 kB

Add note to recommend tuning hyperparameters for downstream applications almost 2 years ago
hyperparam_optimiz_for_disease_classifier.py

6.78 kB

Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets almost 2 years ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. almost 2 years ago
tokenizing_scRNAseq_data.ipynb

3.25 kB

Add instructions to convert gene annotations w/ Ensembl Biomart almost 2 years ago