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Geneformer

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Geneformer / examples

15 contributors

History: 9 commits

Christina Theodoris

Subclass collator for cell classification

402ba9b over 1 year ago

example_input_files
Add example input labels for distinguishing bivalent promoters. over 1 year ago
cell_classification.ipynb

95.8 kB

Subclass collator for cell classification over 1 year ago
gene_classification.ipynb

167 kB

Subclass collator for cell classification over 1 year ago
hyperparam_optimiz_for_disease_classifier.py

6.77 kB

Add example for hyperparameter optimization for disease classifier over 1 year ago
in_silico_perturbation.ipynb

3.37 kB

Add in silico perturbation example notebook. over 1 year ago
pretrain_geneformer_w_deepspeed.py

4.97 kB

Update pretrainer for transformers==4.28.0 over 1 year ago