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ctheodoris
/
Geneformer
like
181
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
Inference Endpoints
License:
apache-2.0
Model card
Files
Files and versions
Community
411
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3a94209
Geneformer
/
geneformer
13 contributors
History:
41 commits
ctheodoris
Fixed bug in gen_attention_mask with len > max_len (
#158
)
3a94209
about 1 year ago
__init__.py
558 Bytes
Add function to extract and plot cell embeddings
about 1 year ago
collator_for_classification.py
29.8 kB
Subclass collator for cell classification
about 1 year ago
emb_extractor.py
17.6 kB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
about 1 year ago
gene_median_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
941 kB
Add Geneformer tokenizer and updated model card
almost 2 years ago
gene_name_id_dict.pkl
pickle
1.12 MB
LFS
Upload gene_name_id_dict.pkl (#14)
about 1 year ago
in_silico_perturber.py
63.7 kB
Fixed bug in gen_attention_mask with len > max_len (#158)
about 1 year ago
in_silico_perturber_stats.py
34.7 kB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
about 1 year ago
pretrainer.py
37 kB
Update pretrainer for transformers==4.28.0
about 1 year ago
token_dictionary.pkl
pickle
Detected Pickle imports (2)
"numpy.dtype"
,
"numpy.core.multiarray.scalar"
How to fix it?
788 kB
Update token_dictionary.pkl
over 1 year ago
tokenizer.py
9.32 kB
Add error for no files found and suppress loompy import warning
about 1 year ago