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ctheodoris
/
Geneformer
like
239
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
License:
apache-2.0
Model card
Files
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542
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10d3f10
Geneformer
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17 contributors
History:
106 commits
Christina Theodoris
update dependencies, reinstate compatibility with python<3.9 with typing for List
10d3f10
over 1 year ago
examples
Add functions for extracting gene embeddings, move state_embs_dict outside isp, fix bugs in isp
over 1 year ago
fine_tuned_models
Add fine-tuned CellClassifier for cardiomyopathy
almost 2 years ago
geneformer-12L-30M
Upload 12 layer Geneformer model
about 2 years ago
geneformer
update dependencies, reinstate compatibility with python<3.9 with typing for List
over 1 year ago
.gitattributes
Safe
1.3 kB
Adding `safetensors` variant of this model (#209)
almost 2 years ago
.gitignore
3.08 kB
Add gitignore file
about 2 years ago
.pre-commit-config.yaml
Safe
737 Bytes
Add pre-commit config
over 1 year ago
MANIFEST.in
127 Bytes
Fixes to stats and adding gene dict attempt number 2 (#13)
about 2 years ago
README.md
6.27 kB
Update model card to emphasize need to install git-lfs and suggest https method
over 1 year ago
config.json
Safe
565 Bytes
upload Geneformer 6L-30M config
over 3 years ago
model.safetensors
Safe
41.2 MB
LFS
Adding `safetensors` variant of this model (#209)
almost 2 years ago
pytorch_model.bin
Safe
pickle
Detected Pickle imports (4)
"torch.LongStorage"
,
"collections.OrderedDict"
,
"torch.FloatStorage"
,
"torch._utils._rebuild_tensor_v2"
What is a pickle import?
41.2 MB
LFS
upload Geneformer 6L-30M
over 3 years ago
requirements.txt
281 Bytes
update dependencies, reinstate compatibility with python<3.9 with typing for List
over 1 year ago
setup.py
972 Bytes
update dependencies, reinstate compatibility with python<3.9 with typing for List
over 1 year ago
training_args.bin
pickle
Detected Pickle imports (4)
"transformers.training_args.TrainingArguments"
,
"transformers.trainer_utils.SchedulerType"
,
"torch.device"
,
"transformers.trainer_utils.IntervalStrategy"
How to fix it?
2.61 kB
LFS
upload training args for Geneformer 6L-30M
over 3 years ago
