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bioCIF
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Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C3p_endo anti
A24 : C C2p_endo anti
A25 : U C3p_endo anti
A26 : G C3p_endo anti
A27 : A O4p_endo anti
A28 : G O4p_endo anti
A29 : C C2p_exo anti
A30 : C C4p_endo syn
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_exo anti
A34 : G C2p_exo anti
A35 : A C3p_exo anti
A36 : G C3p_endo anti
A37 : C C2p_exo anti
A38 : U C2p_exo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A38-A39 : adjacent_5p upward 
A41-A42 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A28-A38 : outward 
Number of stackings = 16
Number of adjacent stackings = 14
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A17-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis 
A29-A36 : C-G Ww/Wh pairing antiparallel cis one_hbond 
A31-A33 : U-G O2P/Hh pairing 
A32-A34 : G-G O2'/Bs pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C4p_exo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C2p_exo anti
A24 : C C3p_endo anti
A25 : U C2p_exo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_exo anti
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C2p_exo anti
A34 : G C3p_endo syn
A35 : A C3p_exo anti
A36 : G C3p_endo anti
A37 : C C2p_exo anti
A38 : U C2p_exo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A22-A41 : outward 
A27-A39 : outward 
Number of stackings = 16
Number of adjacent stackings = 12
Number of non adjacent stackings = 4
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A22-A24 : A-C O2P/Bh pairing 
A22-A40 : A-U Ww/Ws pairing antiparallel cis 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ws pairing antiparallel cis one_hbond 130 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A30-A34 : C-G Ws/Sw pairing antiparallel cis one_hbond 128 
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing 
A34-A35 : G-A O2'/Hh adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C2p_exo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_exo anti
A24 : C C3p_exo anti
A25 : U O4p_endo syn
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_exo anti
A31 : U C3p_endo anti
A32 : G O4p_endo anti
A33 : G C3p_exo anti
A34 : G C3p_endo syn
A35 : A O4p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A27-A39 : outward 
Number of stackings = 11
Number of adjacent stackings = 9
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis one_hbond 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A32-A33 : G-G Sw/Hw adjacent_5p pairing parallel cis one_hbond 
A33-A34 : G-G O2P/Bs adjacent_5p pairing 
A34-A35 : G-A O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C4p_exo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C2p_exo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C3p_endo anti
A24 : C C2p_endo anti
A25 : U C2p_exo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_exo anti
A31 : U C4p_exo anti
A32 : G C1p_endo anti
A33 : G C2p_endo anti
A34 : G C3p_endo anti
A35 : A O4p_endo anti
A36 : G C2p_exo anti
A37 : C C2p_exo anti
A38 : U O4p_endo anti
A39 : C C4p_exo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C2p_exo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A34-A35 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A40-A41 : adjacent_5p upward 
A41-A42 : adjacent_5p upward 
A42-A43 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A34-A36 : upward 
Number of stackings = 18
Number of adjacent stackings = 15
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A22-A24 : A-C O2P/Bh pairing 
A22-A40 : A-U Ww/Ww pairing antiparallel cis XX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C2p_exo anti
A21 : G C2p_exo anti
A22 : A C1p_exo anti
A23 : U C3p_exo syn
A24 : C C3p_exo anti
A25 : U C2p_endo anti
A26 : G C2p_exo anti
A27 : A C2p_exo anti
A28 : G C3p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_exo anti
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_endo anti
A34 : G C3p_endo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C2p_exo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C2p_exo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A39-A40 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A21-A42 : outward 
A22-A24 : upward 
A22-A41 : outward 
Number of stackings = 15
Number of adjacent stackings = 10
Number of non adjacent stackings = 5
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A23-A24 : U-C O2'/Hh adjacent_5p pairing 
A23-A41 : U-C Ww/O2' pairing 
A24-A40 : C-U Ws/Ww pairing antiparallel cis one_hbond 106 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A30-A34 : C-G Ws/Ww pairing antiparallel cis one_hbond 130 
A33-A34 : G-G O2'/Ss adjacent_5p pairing 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C4p_exo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C3p_exo anti
A24 : C C3p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C O4p_endo anti
A30 : C O4p_endo anti
A31 : U O4p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_exo anti
A34 : G C1p_endo syn
A35 : A C2p_exo anti
A36 : G C2p_exo anti
A37 : C C2p_exo anti
A38 : U C2p_exo anti
A39 : C C2p_exo anti
A40 : U C3p_endo anti
A41 : C C4p_exo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A32-A33 : adjacent_5p upward 
A41-A42 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
Number of stackings = 13
Number of adjacent stackings = 12
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 
A26-A41 : G-C Ww/O2P pairing 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A31-A32 : U-G O2'/C8 adjacent_5p pairing 
A32-A34 : G-G O2'/Bs O2'/Ss pairing 
A34-A35 : G-A O2'/Hh adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C2p_exo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C2p_exo anti
A23 : U C2p_exo anti
A24 : C C2p_endo anti
A25 : U C3p_endo anti
A26 : G C4p_exo anti
A27 : A C4p_exo anti
A28 : G C4p_exo anti
A29 : C C4p_exo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C2p_exo anti
A33 : G C3p_endo anti
A34 : G C3p_endo anti
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A38-A39 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
A34-A36 : upward 
Number of stackings = 13
Number of adjacent stackings = 10
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A25-A27 : U-A Ws/Hw pairing parallel cis one_hbond 47 
A26-A39 : G-C Ww/Ww pairing antiparallel cis one_hbond 130 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A30-A33 : C-G Ww/Sw pairing antiparallel cis one_hbond 125 
A32-A33 : G-G O2'/C8 adjacent_5p pairing 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C2p_exo anti
A23 : U C3p_endo anti
A24 : C C3p_endo anti
A25 : U C4p_exo syn
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C4p_exo anti
A29 : C O4p_endo anti
A30 : C O4p_endo anti
A31 : U C3p_endo anti
A32 : G C3p_exo anti
A33 : G C3p_endo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C O4p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C4p_exo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A41-A42 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A22-A41 : outward 
A28-A38 : outward 
Number of stackings = 16
Number of adjacent stackings = 13
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Wh/Wh pairing antiparallel cis one_hbond 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A22-A40 : A-U Ww/Ww pairing antiparallel cis one_hbond 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A31-A32 : U-G O2'/Ss adjacent_5p pairing 
A32-A33 : G-G Sw/Hh adjacent_5p pairing parallel cis one_hbond 109 
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C2p_exo anti
A19 : C C2p_exo anti
A20 : A C2p_exo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C2p_exo anti
A24 : C C2p_endo anti
A25 : U C2p_endo syn
A26 : G C2p_exo anti
A27 : A C4p_exo anti
A28 : G C4p_exo anti
A29 : C C2p_exo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C2p_exo anti
A33 : G C2p_exo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C2p_exo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A40-A41 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
Number of stackings = 13
Number of adjacent stackings = 11
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis 
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A33-A34 : G-G O2P/Bs adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C2p_exo anti
A23 : U C3p_exo anti
A24 : C C3p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A O4p_endo anti
A28 : G O4p_endo anti
A29 : C C2p_exo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C3p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C O4p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A30-A31 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A38-A39 : adjacent_5p upward 
A40-A41 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
A28-A38 : outward 
Number of stackings = 17
Number of adjacent stackings = 14
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C2p_exo anti
A19 : C C2p_exo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C1p_endo syn
A23 : U C2p_exo anti
A24 : C C2p_exo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C4p_exo anti
A28 : G C3p_endo anti
A29 : C C4p_exo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C3p_exo anti
A33 : G C2p_exo anti
A34 : G C2p_exo anti
A35 : A C2p_endo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C O4p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C4p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A21-A42 : outward 
Number of stackings = 12
Number of adjacent stackings = 9
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A30-A34 : C-G O2'/Bs pairing 
A33-A34 : G-G O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C2p_exo anti
A19 : C C3p_endo anti
A20 : A C2p_exo anti
A21 : G C3p_endo anti
A22 : A C3p_endo anti
A23 : U C3p_endo anti
A24 : C C2p_endo anti
A25 : U C3p_endo anti
A26 : G C2p_exo anti
A27 : A C4p_exo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C2p_exo anti
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_endo anti
A34 : G C1p_endo anti
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C O4p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C2p_exo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A37-A38 : adjacent_5p upward 
A41-A42 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A34-A36 : upward 
Number of stackings = 15
Number of adjacent stackings = 13
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis one_hbond 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A30-A34 : C-G O2'/Ww pairing 
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C3p_endo anti
A19 : C C3p_endo anti
A20 : A C2p_exo anti
A21 : G C2p_exo anti
A22 : A O4p_endo syn
A23 : U C4p_endo anti
A24 : C C3p_endo anti
A25 : U C3p_endo syn
A26 : G C3p_endo anti
A27 : A C2p_exo anti
A28 : G C4p_exo anti
A29 : C C2p_exo anti
A30 : C C3p_endo syn
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_exo anti
A34 : G C3p_endo anti
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C4p_exo anti
A39 : C O4p_endo anti
A40 : U C2p_exo anti
A41 : C C4p_exo anti
A42 : U C4p_exo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A37-A38 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
A27-A39 : outward 
Number of stackings = 12
Number of adjacent stackings = 9
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A22-A41 : A-C Bh/O2' pairing 
A23-A40 : U-U Ww/Wh pairing antiparallel cis one_hbond 
A23-A41 : U-C Hw/Wh pairing antiparallel cis one_hbond 102 
A25-A26 : U-G O2'/Hh adjacent_5p pairing 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 130 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis one_hbond 
A29-A30 : C-C Ss/Hh adjacent_5p pairing antiparallel trans one_hbond 
A29-A36 : C-G Ww/Ww pairing antiparallel cis 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C2p_exo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_exo anti
A24 : C C3p_endo anti
A25 : U C3p_endo anti
A26 : G C3p_endo anti
A27 : A C4p_exo anti
A28 : G C3p_endo anti
A29 : C C4p_exo anti
A30 : C C1p_exo anti
A31 : U O4p_endo anti
A32 : G C2p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U O4p_endo anti
A39 : C C4p_exo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward pairing 
A32-A33 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
Number of stackings = 16
Number of adjacent stackings = 14
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A19-A43 : C-G Ww/Ww pairing antiparallel cis 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis 
A22-A24 : A-C O2P/Bh pairing 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A29-A30 : C-C O2P/Bh adjacent_5p upward pairing 
A29-A36 : C-G Wh/Wh pairing antiparallel cis one_hbond 
A34-A35 : G-A O2'/Hh adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G O4p_endo anti
A18 : G C2p_exo anti
A19 : C C4p_exo anti
A20 : A C4p_exo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C3p_endo anti
A24 : C C3p_endo anti
A25 : U C3p_endo syn
A26 : G C2p_exo anti
A27 : A C4p_exo anti
A28 : G C4p_exo anti
A29 : C O4p_endo anti
A30 : C C3p_endo anti
A31 : U O4p_endo anti
A32 : G C3p_endo anti
A33 : G C2p_endo anti
A34 : G C1p_endo anti
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C O4p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C2p_exo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
Number of stackings = 14
Number of adjacent stackings = 12
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A30-A34 : C-G O2'/Bs pairing 
A33-A34 : G-G O2P/Bs adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C2p_exo anti
A18 : G C2p_exo anti
A19 : C C3p_endo anti
A20 : A C2p_exo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C3p_exo anti
A24 : C C3p_endo anti
A25 : U C2p_endo anti
A26 : G C3p_endo anti
A27 : A C3p_endo anti
A28 : G C3p_endo anti
A29 : C C3p_endo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C2p_exo anti
A33 : G C2p_exo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C3p_endo anti
A37 : C C3p_endo anti
A38 : U O4p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U O4p_endo anti
A43 : G C2p_exo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
Number of stackings = 10
Number of adjacent stackings = 9
Number of non adjacent stackings = 1
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis XIX 
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis 
A22-A23 : A-U Ss/Hh adjacent_5p pairing antiparallel trans one_hbond 
A22-A24 : A-C O2P/Bh pairing 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis 
Residue conformations -------------------------------------------
A17 : G C4p_exo anti
A18 : G C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C4p_exo anti
A23 : U C2p_exo anti
A24 : C C3p_endo anti
A25 : U C2p_endo anti
A26 : G C2p_exo anti
A27 : A O4p_endo anti
A28 : G O4p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_exo anti
A31 : U C4p_endo anti
A32 : G C2p_exo anti
A33 : G C3p_endo anti
A34 : G O4p_exo anti
A35 : A C1p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U O4p_endo anti
A39 : C O4p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C4p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A29-A30 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A22-A41 : outward 
Number of stackings = 13
Number of adjacent stackings = 11
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A26-A39 : G-C Ww/Ww pairing antiparallel cis 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ws/Ws pairing antiparallel cis one_hbond 
A28-A38 : G-U Bs/O2' pairing 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A30-A33 : C-G O2'/Ss O2'/C8 pairing 
A31-A32 : U-G O2P/Hh adjacent_5p pairing 
A31-A33 : U-G O2P/Hh pairing 
A33-A34 : G-G O2'/Ss O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C3p_endo anti
A19 : C C2p_exo anti
A20 : A C2p_exo anti
A21 : G C2p_exo anti
A22 : A C1p_endo syn
A23 : U C2p_exo anti
A24 : C C1p_exo anti
A25 : U C3p_endo syn
A26 : G C3p_endo anti
A27 : A C4p_exo anti
A28 : G C4p_exo anti
A29 : C C2p_exo anti
A30 : C C3p_endo anti
A31 : U C3p_endo anti
A32 : G C2p_exo anti
A33 : G C2p_endo anti
A34 : G C2p_exo syn
A35 : A C3p_exo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U O4p_endo anti
A39 : C C4p_exo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C4p_exo anti
A43 : G C3p_endo anti
A44 : C C3p_endo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A28-A29 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A37-A38 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A21-A42 : outward 
Number of stackings = 11
Number of adjacent stackings = 8
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A18-A44 : G-C Ww/Ww pairing antiparallel cis one_hbond 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis one_hbond 
A31-A33 : U-G Ww/O2P pairing 
A33-A34 : G-G O2P/Bs adjacent_5p pairing 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C3p_endo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C3p_endo anti
A22 : A C2p_exo anti
A23 : U C2p_exo anti
A24 : C C3p_endo anti
A25 : U C3p_endo syn
A26 : G C3p_endo anti
A27 : A C4p_exo anti
A28 : G O4p_endo anti
A29 : C C2p_exo anti
A30 : C O4p_endo anti
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C3p_exo anti
A34 : G C3p_endo anti
A35 : A C2p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C3p_endo anti
A39 : C C3p_endo anti
A40 : U C2p_exo anti
A41 : C C3p_endo anti
A42 : U C3p_endo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A23-A24 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A37-A38 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A18-A45 : outward 
A20-A43 : outward 
A27-A39 : outward 
Number of stackings = 12
Number of adjacent stackings = 9
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis 
A18-A44 : G-C Ww/Ww pairing antiparallel cis XIX 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis XIX 
A22-A40 : A-U Bs/Ws pairing antiparallel cis one_hbond 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A28-A37 : G-C Ww/Ww pairing antiparallel cis XIX 
A29-A36 : C-G Ws/Ww pairing antiparallel cis one_hbond 
A31-A32 : U-G Ww/Hw adjacent_5p pairing parallel cis one_hbond 
Residue conformations -------------------------------------------
A17 : G C3p_endo anti
A18 : G C2p_exo anti
A19 : C C3p_endo anti
A20 : A C3p_endo anti
A21 : G C2p_exo anti
A22 : A C3p_endo anti
A23 : U C3p_exo anti
A24 : C C3p_endo anti
A25 : U C1p_exo syn
A26 : G C3p_endo anti
A27 : A O4p_endo anti
A28 : G O4p_endo anti
A29 : C C2p_exo anti
A30 : C C2p_exo anti
A31 : U C3p_endo anti
A32 : G C3p_endo anti
A33 : G C2p_endo anti
A34 : G C2p_exo anti
A35 : A C4p_endo anti
A36 : G C2p_exo anti
A37 : C C3p_endo anti
A38 : U C2p_exo anti
A39 : C C3p_endo anti
A40 : U C3p_endo anti
A41 : C C3p_endo anti
A42 : U C2p_exo anti
A43 : G C3p_endo anti
A44 : C C2p_exo anti
A45 : C C3p_endo anti
Adjacent stackings ----------------------------------------------
A17-A18 : adjacent_5p upward 
A18-A19 : adjacent_5p upward 
A19-A20 : adjacent_5p upward 
A20-A21 : adjacent_5p upward 
A21-A22 : adjacent_5p upward 
A22-A23 : adjacent_5p upward 
A26-A27 : adjacent_5p upward 
A27-A28 : adjacent_5p upward 
A36-A37 : adjacent_5p upward 
A39-A40 : adjacent_5p upward 
A43-A44 : adjacent_5p upward 
A44-A45 : adjacent_5p upward 
Non-Adjacent stackings ------------------------------------------
A20-A43 : outward 
A21-A42 : outward 
A22-A41 : outward 
Number of stackings = 15
Number of adjacent stackings = 12
Number of non adjacent stackings = 3
Base-pairs ------------------------------------------------------
A17-A45 : G-C Ww/Ww pairing antiparallel cis 
A19-A43 : C-G Ww/Ww pairing antiparallel cis XIX 
A20-A42 : A-U Ww/Ww pairing antiparallel cis XX 
A21-A41 : G-C Ww/Ww pairing antiparallel cis 
A26-A39 : G-C Ww/Ww pairing antiparallel cis XIX 
A27-A38 : A-U Ww/Ww pairing antiparallel cis XX 
A29-A36 : C-G Ww/Ww pairing antiparallel cis XIX 
A34-A35 : G-A O2'/Hh O2'/C8 adjacent_5p pairing