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---
tags:
- generated_from_trainer
datasets:
- ncbi_disease
metrics:
- precision
- recall
- f1
- accuracy
model-index:
- name: biobert-finetuned-ncbi
results:
- task:
name: Token Classification
type: token-classification
dataset:
name: ncbi_disease
type: ncbi_disease
config: ncbi_disease
split: train
args: ncbi_disease
metrics:
- name: Precision
type: precision
value: 0.8192771084337349
- name: Recall
type: recall
value: 0.8640406607369758
- name: F1
type: f1
value: 0.8410636982065552
- name: Accuracy
type: accuracy
value: 0.9856218100336114
---
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
should probably proofread and complete it, then remove this comment. -->
# biobert-finetuned-ncbi
This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on the ncbi_disease dataset.
It achieves the following results on the evaluation set:
- Loss: 0.0590
- Precision: 0.8193
- Recall: 0.8640
- F1: 0.8411
- Accuracy: 0.9856
## Model description
More information needed
## Intended uses & limitations
More information needed
## Training and evaluation data
More information needed
## Training procedure
### Training hyperparameters
The following hyperparameters were used during training:
- learning_rate: 2e-05
- train_batch_size: 8
- eval_batch_size: 8
- seed: 42
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
- lr_scheduler_type: linear
- num_epochs: 3
### Training results
| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
| 0.1049 | 1.0 | 680 | 0.0588 | 0.7826 | 0.7776 | 0.7801 | 0.9806 |
| 0.0362 | 2.0 | 1360 | 0.0539 | 0.8084 | 0.8577 | 0.8323 | 0.9852 |
| 0.0109 | 3.0 | 2040 | 0.0590 | 0.8193 | 0.8640 | 0.8411 | 0.9856 |
### Framework versions
- Transformers 4.25.1
- Pytorch 1.13.1+cu116
- Datasets 2.8.0
- Tokenizers 0.13.2
|