File size: 822 Bytes
7dc663f
 
 
 
 
 
a20cc92
 
3a2a033
 
7dc663f
 
7b5dc95
a20cc92
9df4cb2
7dc663f
 
 
 
05c691c
7dc663f
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
---
license: mit
---

**Base model:** [westlake-repl/SaProt_650M_AF2](https://huggingface.co/westlake-repl/SaProt_650M_AF2)

**Task type:** protein-level regression

Label is the log-fluorescence intensity.

**Dataset:** [SaProtHub/Dataset-Fluorescence-TAPE](https://huggingface.co/datasets/SaProtHub/Dataset-Fluorescence-TAPE)

**Model input type:** Amino acid sequence

**Performance (on test set):** 0.697 Spearman's ρ

**LoRA config:**
- **r:** 8
- **lora_dropout:** 0
- **lora_alpha:** 16
- **target_modules:** ["query", "key", "value", "intermediate.dense", "output.dense"]
- **modules_to_save:** ["classifier"]

**Training config:**

- **optimizer:**
  - **class:** AdamW
  - **betas:** (0.9, 0.98)
  - **weight_decay:** 0.01
- **learning rate:** 1e-4
- **epoch:** 50
- **batch size:** 64
- **precision:** 16-mixed