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--- |
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license: mit |
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base_model: microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext |
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tags: |
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- generated_from_trainer |
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datasets: |
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- ncbi_disease |
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metrics: |
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- precision |
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- recall |
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- f1 |
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- accuracy |
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model-index: |
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- name: checkpoint-1000 |
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results: |
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- task: |
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name: Token Classification |
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type: token-classification |
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dataset: |
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name: ncbi_disease |
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type: ncbi_disease |
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config: ncbi_disease |
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split: test |
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args: ncbi_disease |
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metrics: |
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- name: Precision |
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type: precision |
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value: 0.8456973293768546 |
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- name: Recall |
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type: recall |
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value: 0.890625 |
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- name: F1 |
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type: f1 |
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value: 0.8675799086757991 |
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- name: Accuracy |
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type: accuracy |
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value: 0.9850593950279626 |
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--- |
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You |
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should probably proofread and complete it, then remove this comment. --> |
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# checkpoint-1000 |
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This model is a fine-tuned version of [microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext) on the ncbi_disease dataset. |
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It achieves the following results on the evaluation set: |
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- Loss: 0.0543 |
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- Precision: 0.8457 |
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- Recall: 0.8906 |
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- F1: 0.8676 |
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- Accuracy: 0.9851 |
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## Model description |
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More information needed |
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## Intended uses & limitations |
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More information needed |
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## Training and evaluation data |
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More information needed |
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## Training procedure |
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### Training hyperparameters |
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The following hyperparameters were used during training: |
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- learning_rate: 2e-05 |
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- train_batch_size: 16 |
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- eval_batch_size: 16 |
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- seed: 42 |
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08 |
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- lr_scheduler_type: linear |
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- num_epochs: 4 |
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### Training results |
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy | |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:| |
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| No log | 1.0 | 340 | 0.0596 | 0.7778 | 0.875 | 0.8235 | 0.9795 | |
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| 0.0787 | 2.0 | 680 | 0.0416 | 0.8246 | 0.8865 | 0.8544 | 0.9851 | |
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| 0.0202 | 3.0 | 1020 | 0.0494 | 0.8385 | 0.8812 | 0.8593 | 0.9846 | |
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| 0.0202 | 4.0 | 1360 | 0.0543 | 0.8457 | 0.8906 | 0.8676 | 0.9851 | |
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### Framework versions |
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- Transformers 4.35.2 |
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- Pytorch 2.1.0+cu118 |
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- Datasets 2.15.0 |
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- Tokenizers 0.15.0 |
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