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{
 "cells": [
  {
   "cell_type": "markdown",
   "id": "3f9ce240-fd1a-4550-83c7-8cf9658b1d3a",
   "metadata": {},
   "source": [
    "# Dataloading (1B+ Training Pairs)\n",
    "\n",
    "## This notebook collects and uploads all 50 relevant sentence embedding datasets to S3 as .json.gz files where each line contains one training record"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 62,
   "id": "d7af8d0e-b3ed-4007-abdd-5952d775e119",
   "metadata": {
    "tags": []
   },
   "outputs": [],
   "source": [
    "import os\n",
    "import pandas as pd\n",
    "\n",
    "os.chdir('/home/ec2-user/SageMaker')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 63,
   "id": "686699fb-d2c9-4653-afca-580aef343451",
   "metadata": {
    "collapsed": true,
    "jupyter": {
     "outputs_hidden": true
    },
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
      "              : update-motd, versionlock\n",
      "Cleaning repos: amzn2-core amzn2extra-docker amzn2extra-epel\n",
      "              : amzn2extra-kernel-5.10 amzn2extra-python3.8 centos-extras\n",
      "              : copr:copr.fedorainfracloud.org:vbatts:shadow-utils-newxidmap\n",
      "              : docker-ce-stable libnvidia-container neuron\n",
      "21 metadata files removed\n",
      "15 sqlite files removed\n",
      "0 metadata files removed\n",
      "Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
      "              : update-motd, versionlock\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "https://download.docker.com/linux/centos/2/x86_64/stable/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found\n",
      "Trying other mirror.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "62 packages excluded due to repository priority protections\n",
      "Resolving Dependencies\n",
      "--> Running transaction check\n",
      "---> Package epel-release.noarch 0:7-11 will be installed\n",
      "--> Finished Dependency Resolution\n",
      "\n",
      "Dependencies Resolved\n",
      "\n",
      "================================================================================\n",
      " Package              Arch           Version      Repository               Size\n",
      "================================================================================\n",
      "Installing:\n",
      " epel-release         noarch         7-11         amzn2extra-epel          15 k\n",
      "\n",
      "Transaction Summary\n",
      "================================================================================\n",
      "Install  1 Package\n",
      "\n",
      "Total download size: 15 k\n",
      "Installed size: 24 k\n",
      "Downloading packages:\n",
      "Running transaction check\n",
      "Running transaction test\n",
      "Transaction test succeeded\n",
      "Running transaction\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Warning: RPMDB altered outside of yum.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "  Installing : epel-release-7-11.noarch                                     1/1 \n",
      "  Verifying  : epel-release-7-11.noarch                                     1/1 \n",
      "\n",
      "Installed:\n",
      "  epel-release.noarch 0:7-11                                                    \n",
      "\n",
      "Complete!\n",
      "Installing epel-release\n",
      "  0  ansible2                 available    \\\n",
      "        [ =2.4.2  =2.4.6  =2.8  =stable ]\n",
      "  2  httpd_modules            available    [ =1.0  =stable ]\n",
      "  3  memcached1.5             available    \\\n",
      "        [ =1.5.1  =1.5.16  =1.5.17 ]\n",
      "  6  postgresql10             available    [ =10  =stable ]\n",
      "  9  R3.4                     available    [ =3.4.3  =stable ]\n",
      " 10  rust1                    available    \\\n",
      "        [ =1.22.1  =1.26.0  =1.26.1  =1.27.2  =1.31.0  =1.38.0\n",
      "          =stable ]\n",
      " 18  libreoffice              available    \\\n",
      "        [ =5.0.6.2_15  =5.3.6.1  =stable ]\n",
      " 19  gimp                     available    [ =2.8.22 ]\n",
      " 20  docker=latest            enabled      \\\n",
      "        [ =17.12.1  =18.03.1  =18.06.1  =18.09.9  =stable ]\n",
      " 21  mate-desktop1.x          available    \\\n",
      "        [ =1.19.0  =1.20.0  =stable ]\n",
      " 22  GraphicsMagick1.3        available    \\\n",
      "        [ =1.3.29  =1.3.32  =1.3.34  =stable ]\n",
      " 23  tomcat8.5                available    \\\n",
      "        [ =8.5.31  =8.5.32  =8.5.38  =8.5.40  =8.5.42  =8.5.50\n",
      "          =stable ]\n",
      " 24  epel=latest              enabled      [ =7.11  =stable ]\n",
      " 25  testing                  available    [ =1.0  =stable ]\n",
      " 26  ecs                      available    [ =stable ]\n",
      " 27  corretto8                available    \\\n",
      "        [ =1.8.0_192  =1.8.0_202  =1.8.0_212  =1.8.0_222  =1.8.0_232\n",
      "          =1.8.0_242  =stable ]\n",
      " 29  golang1.11               available    \\\n",
      "        [ =1.11.3  =1.11.11  =1.11.13  =stable ]\n",
      " 30  squid4                   available    [ =4  =stable ]\n",
      " 32  lustre2.10               available    \\\n",
      "        [ =2.10.5  =2.10.8  =stable ]\n",
      " 33  java-openjdk11           available    [ =11  =stable ]\n",
      " 34  lynis                    available    [ =stable ]\n",
      " 36  BCC                      available    [ =0.x  =stable ]\n",
      " 37  mono                     available    [ =5.x  =stable ]\n",
      " 38  nginx1                   available    [ =stable ]\n",
      " 40  mock                     available    [ =stable ]\n",
      " 41  postgresql11             available    [ =11  =stable ]\n",
      " 43  livepatch                available    [ =stable ]\n",
      " 44  python3.8=latest         enabled      [ =stable ]\n",
      " 45  haproxy2                 available    [ =stable ]\n",
      " 46  collectd                 available    [ =stable ]\n",
      " 47  aws-nitro-enclaves-cli   available    [ =stable ]\n",
      " 48  R4                       available    [ =stable ]\n",
      "  _  kernel-5.4               available    [ =stable ]\n",
      " 50  selinux-ng               available    [ =stable ]\n",
      " 51  php8.0                   available    [ =stable ]\n",
      " 52  tomcat9                  available    [ =stable ]\n",
      " 53  unbound1.13              available    [ =stable ]\n",
      " 54  mariadb10.5              available    [ =stable ]\n",
      " 55  kernel-5.10=latest       enabled      [ =stable ]\n",
      " 56  redis6                   available    [ =stable ]\n",
      " 57  ruby3.0                  available    [ =stable ]\n",
      " 58  postgresql12             available    [ =stable ]\n",
      " 59  postgresql13             available    [ =stable ]\n",
      " 60  mock2                    available    [ =stable ]\n",
      " 61  dnsmasq2.85              available    [ =stable ]\n",
      " 62  kernel-5.15              available    [ =stable ]\n",
      " 63  postgresql14             available    [ =stable ]\n",
      " 64  firefox                  available    [ =stable ]\n",
      " 65  lustre                   available    [ =stable ]\n",
      " 66  php8.1                   available    [ =stable ]\n",
      " 67  awscli1                  available    [ =stable ]\n",
      " 68  php8.2                   available    [ =stable ]\n",
      " 69  dnsmasq                  available    [ =stable ]\n",
      " 70  unbound1.17              available    [ =stable ]\n",
      " 71  golang1.19               available    [ =stable ]\n",
      " 72  collectd-python3         available    [ =stable ]\n",
      "Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
      "              : update-motd, versionlock\n",
      "================================== repo: epel ==================================\n",
      "[epel]\n",
      "async = True\n",
      "bandwidth = 0\n",
      "base_persistdir = /var/lib/yum/repos/x86_64/2\n",
      "baseurl = \n",
      "cache = 0\n",
      "cachedir = /var/cache/yum/x86_64/2/epel\n",
      "check_config_file_age = True\n",
      "compare_providers_priority = 80\n",
      "cost = 1000\n",
      "deltarpm_metadata_percentage = 100\n",
      "deltarpm_percentage = \n",
      "enabled = True\n",
      "enablegroups = True\n",
      "exclude = \n",
      "failovermethod = priority\n",
      "ftp_disable_epsv = False\n",
      "gpgcadir = /var/lib/yum/repos/x86_64/2/epel/gpgcadir\n",
      "gpgcakey = \n",
      "gpgcheck = True\n",
      "gpgdir = /var/lib/yum/repos/x86_64/2/epel/gpgdir\n",
      "gpgkey = file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n",
      "hdrdir = /var/cache/yum/x86_64/2/epel/headers\n",
      "http_caching = all\n",
      "includepkgs = \n",
      "ip_resolve = \n",
      "keepalive = True\n",
      "keepcache = False\n",
      "mddownloadpolicy = sqlite\n",
      "mdpolicy = group:small\n",
      "mediaid = \n",
      "metadata_expire = 21600\n",
      "metadata_expire_filter = read-only:present\n",
      "metalink = https://mirrors.fedoraproject.org/metalink?repo=epel-7&arch=x86_64\n",
      "minrate = 0\n",
      "mirrorlist = \n",
      "mirrorlist_expire = 86400\n",
      "name = Extra Packages for Enterprise Linux 7 - x86_64\n",
      "old_base_cache_dir = \n",
      "password = \n",
      "persistdir = /var/lib/yum/repos/x86_64/2/epel\n",
      "pkgdir = /var/cache/yum/x86_64/2/epel/packages\n",
      "priority = 99\n",
      "proxy = False\n",
      "proxy_dict = \n",
      "proxy_password = \n",
      "proxy_username = \n",
      "repo_gpgcheck = False\n",
      "report_instanceid = False\n",
      "retries = 7\n",
      "skip_if_unavailable = False\n",
      "ssl_check_cert_permissions = True\n",
      "sslcacert = \n",
      "sslclientcert = \n",
      "sslclientkey = \n",
      "sslverify = True\n",
      "throttle = 0\n",
      "timeout = 5.0\n",
      "ui_id = epel/x86_64\n",
      "ui_repoid_vars = releasever,\n",
      "   basearch\n",
      "username = \n",
      "\n",
      "Loaded plugins: dkms-build-requires, extras_suggestions, langpacks, priorities,\n",
      "              : update-motd, versionlock\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "https://download.docker.com/linux/centos/2/x86_64/stable/repodata/repomd.xml: [Errno 14] HTTPS Error 404 - Not Found\n",
      "Trying other mirror.\n",
      "http://mirror.es.its.nyu.edu/epel/7/x86_64/repodata/repomd.xml: [Errno 12] Timeout on http://mirror.es.its.nyu.edu/epel/7/x86_64/repodata/repomd.xml: (28, 'Failed to connect to mirror.es.its.nyu.edu port 80 after 5001 ms: Timeout was reached')\n",
      "Trying other mirror.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "286 packages excluded due to repository priority protections\n",
      "Resolving Dependencies\n",
      "--> Running transaction check\n",
      "---> Package git-lfs.x86_64 0:2.10.0-2.el7 will be installed\n",
      "--> Finished Dependency Resolution\n",
      "\n",
      "Dependencies Resolved\n",
      "\n",
      "================================================================================\n",
      " Package           Arch             Version                Repository      Size\n",
      "================================================================================\n",
      "Installing:\n",
      " git-lfs           x86_64           2.10.0-2.el7           epel           3.7 M\n",
      "\n",
      "Transaction Summary\n",
      "================================================================================\n",
      "Install  1 Package\n",
      "\n",
      "Total download size: 3.7 M\n",
      "Installed size: 13 M\n",
      "Downloading packages:\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "warning: /var/cache/yum/x86_64/2/epel/packages/git-lfs-2.10.0-2.el7.x86_64.rpm: Header V4 RSA/SHA256 Signature, key ID 352c64e5: NOKEY\n",
      "Importing GPG key 0x352C64E5:\n",
      " Userid     : \"Fedora EPEL (7) <epel@fedoraproject.org>\"\n",
      " Fingerprint: 91e9 7d7c 4a5e 96f1 7f3e 888f 6a2f aea2 352c 64e5\n",
      " Package    : epel-release-7-11.noarch (@amzn2extra-epel)\n",
      " From       : /etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Public key for git-lfs-2.10.0-2.el7.x86_64.rpm is not installed\n",
      "Retrieving key from file:///etc/pki/rpm-gpg/RPM-GPG-KEY-EPEL-7\n",
      "Running transaction check\n",
      "Running transaction test\n",
      "Transaction test succeeded\n",
      "Running transaction\n",
      "  Installing : git-lfs-2.10.0-2.el7.x86_64                                  1/1 \n",
      "  Verifying  : git-lfs-2.10.0-2.el7.x86_64                                  1/1 \n",
      "\n",
      "Installed:\n",
      "  git-lfs.x86_64 0:2.10.0-2.el7                                                 \n",
      "\n",
      "Complete!\n",
      "Git LFS initialized.\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "0"
      ]
     },
     "execution_count": 63,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# install git-lfs\n",
    "os.system('sudo amazon-linux-extras install epel -y')\n",
    "os.system('sudo yum-config-manager --enable epel')\n",
    "os.system('sudo yum install git-lfs -y')\n",
    "os.system('git lfs install')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "6595a6c5-9fae-4bd4-b096-53475ec98294",
   "metadata": {
    "tags": []
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Cloning into 'stackexchange_title_body_jsonl'...\n",
      "Cloning into 'stackexchange_titlebody_best_voted_answer_jsonl'...\n",
      "Cloning into 'stackexchange_title_best_voted_answer_jsonl'...\n",
      "Cloning into 'stackexchange_titlebody_best_and_down_voted_answer_jsonl'...\n",
      "Cloning into 'reddit-title-body'...\n",
      "Cloning into '1B_sentence_embeddings'...\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "0"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# clone relevant datasets' github repositories\n",
    "stacks = ['stackexchange_title_body_jsonl', #25.3M \n",
    "          'stackexchange_titlebody_best_voted_answer_jsonl', #4.75M\n",
    "          'stackexchange_title_best_voted_answer_jsonl', #4.75M\n",
    "          'stackexchange_titlebody_best_and_down_voted_answer_jsonl'] #210K\n",
    "\n",
    "os.environ['GIT_LFS_SKIP_SMUDGE'] = \"1\"\n",
    "\n",
    "# clone stackexchange repos\n",
    "for stack in stacks:\n",
    "    os.system(f'git clone https://huggingface.co/datasets/flax-sentence-embeddings/{stack}')\n",
    "# clone reddit repo\n",
    "os.system('git clone https://huggingface.co/datasets/sentence-transformers/reddit-title-body')\n",
    "# clone 1B+ sentence embeddings repo (this one is just for reference)\n",
    "os.system('git clone https://github.com/AntoineSimoulin/1B_sentence_embeddings')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "56438029-0f26-491c-b405-f92fb9caeff7",
   "metadata": {
    "collapsed": true,
    "jupyter": {
     "outputs_hidden": true
    },
    "tags": []
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Downloading 4 StackExchange GitHub datasets into s3://lodestone-rnd/data/\n",
      "upload: ./networkengineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/networkengineering.stackexchange.com.json.gz\n",
      "upload: ./emacs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/emacs.stackexchange.com.json.gz\n",
      "upload: ./christianity.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/christianity.stackexchange.com.json.gz\n",
      "upload: ./bitcoin.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/bitcoin.stackexchange.com.json.gz\n",
      "upload: ./academia.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/academia.stackexchange.com.json.gz\n",
      "upload: ./music.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/music.stackexchange.com.json.gz\n",
      "upload: ./biology.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/biology.stackexchange.com.json.gz\n",
      "upload: ./history.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/history.stackexchange.com.json.gz\n",
      "upload: ./skeptics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/skeptics.stackexchange.com.json.gz\n",
      "upload: ./anime.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/anime.stackexchange.com.json.gz\n",
      "upload: ./quant.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/quant.stackexchange.com.json.gz\n",
      "upload: ./boardgames.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/boardgames.stackexchange.com.json.gz\n",
      "upload: ./judaism.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/judaism.stackexchange.com.json.gz\n",
      "upload: ./travel.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/travel.stackexchange.com.json.gz\n",
      "upload: ./gaming.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gaming.stackexchange.com.json.gz\n",
      "upload: ./webapps.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/webapps.stackexchange.com.json.gz\n",
      "upload: ./stats.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/stats.stackexchange.com.json.gz\n",
      "upload: ./law.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/law.stackexchange.com.json.gz\n",
      "upload: ./scifi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/scifi.stackexchange.com.json.gz\n",
      "upload: ./bicycles.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/bicycles.stackexchange.com.json.gz\n",
      "upload: ./datascience.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/datascience.stackexchange.com.json.gz\n",
      "upload: ./softwareengineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/softwareengineering.stackexchange.com.json.gz\n",
      "upload: ./islam.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/islam.stackexchange.com.json.gz\n",
      "upload: ./craftcms.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/craftcms.stackexchange.com.json.gz\n",
      "upload: ./diy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/diy.stackexchange.com.json.gz\n",
      "upload: ./arduino.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/arduino.stackexchange.com.json.gz\n",
      "upload: ./raspberrypi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/raspberrypi.stackexchange.com.json.gz\n",
      "upload: ./wordpress.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/wordpress.stackexchange.com.json.gz\n",
      "upload: ./dba.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/dba.stackexchange.com.json.gz\n",
      "upload: ./apple.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/apple.stackexchange.com.json.gz\n",
      "upload: ./hinduism.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/hinduism.stackexchange.com.json.gz\n",
      "upload: ./mechanics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mechanics.stackexchange.com.json.gz\n",
      "upload: ./gamedev.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gamedev.stackexchange.com.json.gz\n",
      "upload: ./writers.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/writers.stackexchange.com.json.gz\n",
      "upload: ./mathematica.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mathematica.stackexchange.com.json.gz\n",
      "upload: ./unix.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/unix.stackexchange.com.json.gz\n",
      "upload: ./magento.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/magento.stackexchange.com.json.gz\n",
      "upload: ./ethereum.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ethereum.stackexchange.com.json.gz\n",
      "upload: ./electronics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/electronics.stackexchange.com.json.gz\n",
      "upload: ./cs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cs.stackexchange.com.json.gz\n",
      "upload: ./blender.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/blender.stackexchange.com.json.gz\n",
      "upload: ./drupal.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/drupal.stackexchange.com.json.gz\n",
      "upload: ./small_stackexchanges.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/small_stackexchanges.json.gz\n",
      "upload: ./photo.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/photo.stackexchange.com.json.gz\n",
      "upload: ./engineering.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/engineering.stackexchange.com.json.gz\n",
      "upload: ./ux.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ux.stackexchange.com.json.gz\n",
      "upload: ./german.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/german.stackexchange.com.json.gz\n",
      "upload: ./japanese.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/japanese.stackexchange.com.json.gz\n",
      "upload: ./civicrm.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/civicrm.stackexchange.com.json.gz\n",
      "upload: ./sharepoint.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/sharepoint.stackexchange.com.json.gz\n",
      "upload: ./mathoverflow.net.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/mathoverflow.net.json.gz\n",
      "upload: ./meta.stackoverflow.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/meta.stackoverflow.com.json.gz\n",
      "upload: ./rpg.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/rpg.stackexchange.com.json.gz\n",
      "upload: ./crypto.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/crypto.stackexchange.com.json.gz\n",
      "upload: ./vi.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/vi.stackexchange.com.json.gz\n",
      "upload: ./graphicdesign.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/graphicdesign.stackexchange.com.json.gz\n",
      "upload: ./cooking.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cooking.stackexchange.com.json.gz\n",
      "upload: ./math.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/math.stackexchange.com.json.gz\n",
      "upload: ./expressionengine.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/expressionengine.stackexchange.com.json.gz\n",
      "upload: ./movies.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/movies.stackexchange.com.json.gz\n",
      "upload: ./salesforce.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/salesforce.stackexchange.com.json.gz\n",
      "upload: ./physics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/physics.stackexchange.com.json.gz\n",
      "upload: ./aviation.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/aviation.stackexchange.com.json.gz\n",
      "upload: ./gardening.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gardening.stackexchange.com.json.gz\n",
      "upload: ./english.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/english.stackexchange.com.json.gz\n",
      "upload: ./askubuntu.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/askubuntu.com.json.gz\n",
      "upload: ./french.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/french.stackexchange.com.json.gz\n",
      "upload: ./codereview.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/codereview.stackexchange.com.json.gz\n",
      "upload: ./softwarerecs.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/softwarerecs.stackexchange.com.json.gz\n",
      "upload: ./rus.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/rus.stackexchange.com.json.gz\n",
      "upload: ./money.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/money.stackexchange.com.json.gz\n",
      "upload: ./philosophy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/philosophy.stackexchange.com.json.gz\n",
      "upload: ./chemistry.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/chemistry.stackexchange.com.json.gz\n",
      "upload: ./meta.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/meta.stackexchange.com.json.gz\n",
      "upload: ./cstheory.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/cstheory.stackexchange.com.json.gz\n",
      "upload: ./space.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/space.stackexchange.com.json.gz\n",
      "upload: ./politics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/politics.stackexchange.com.json.gz\n",
      "upload: ./ell.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/ell.stackexchange.com.json.gz\n",
      "upload: ./puzzling.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/puzzling.stackexchange.com.json.gz\n",
      "upload: ./astronomy.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/astronomy.stackexchange.com.json.gz\n",
      "upload: ./worldbuilding.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/worldbuilding.stackexchange.com.json.gz\n",
      "upload: ./economics.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/economics.stackexchange.com.json.gz\n",
      "upload: ./workplace.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/workplace.stackexchange.com.json.gz\n",
      "upload: ./tex.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/tex.stackexchange.com.json.gz\n",
      "upload: ./android.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/android.stackexchange.com.json.gz\n",
      "upload: ./gis.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/gis.stackexchange.com.json.gz\n",
      "upload: ./dsp.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/dsp.stackexchange.com.json.gz\n",
      "upload: ./superuser.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_body_jsonl/superuser.com.json.gz\n",
      "upload: ./english.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/english.stackexchange.com.json.gz\n",
      "upload: ./meta.serverfault.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/meta.serverfault.com.json.gz\n",
      "upload: ./scicomp.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/scicomp.stackexchange.com.json.gz\n",
      "upload: ./askubuntu.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/askubuntu.com.json.gz\n",
      "upload: ./french.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/french.stackexchange.com.json.gz\n",
      "upload: ./coffee.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/coffee.stackexchange.com.json.gz\n",
      "upload: ./codereview.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/codereview.stackexchange.com.json.gz\n",
      "upload: ./sound.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/sound.stackexchange.com.json.gz\n",
      "upload: ./opensource.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/opensource.stackexchange.com.json.gz\n",
      "upload: ./woodworking.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/woodworking.stackexchange.com.json.gz\n",
      "upload: ./outdoors.stackexchange.com.jsonl.gz to s3://lodestone-rnd/data/stackexchange_title_best_voted_answer_jsonl/outdoors.stackexchange.com.json.gz\n",
      "upload: ./reddit_title_text_2018.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2018.json.gz\n",
      "upload: ./reddit_title_text_2011.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2011.json.gz\n",
      "upload: ./reddit_title_text_2020.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2020.json.gz\n",
      "upload: ./reddit_title_text_2012.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2012.json.gz\n",
      "upload: ./reddit_title_text_2021.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2021.json.gz\n",
      "upload: ./reddit_title_text_2019.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2019.json.gz\n",
      "upload: ./reddit_title_text_2010.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2010.json.gz\n",
      "upload: ./reddit_title_text_2014.jsonl.gz to s3://lodestone-rnd/data/reddit-title-body/reddit_title_text_2014.json.gz\n",
      "\u001b[32mDone\u001b[0m\n",
      "Total files uploaded: 12\n",
      "\n",
      "\n",
      "Downloading 9 HuggingFace datasets into s3://lodestone-rnd/data/\n",
      "Downloading dataset S2ORC_citations_abstracts (39,567,485 pairs) ... "
     ]
    }
   ],
   "source": [
    "# DOWNLOAD GITHUB DATASETS (STACKEXCHANGE (https://huggingface.co/flax-sentence-embeddings) & REDDIT (https://huggingface.co/datasets/sentence-transformers/reddit-title-body))\n",
    "\n",
    "# these are the files marked as unsafe by HuggingFace when viewing the each of the datasets' pages\n",
    "unsafe = [[\"serverfault.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
    "          [\"monero.stackexchange.com.jsonl.gz\", \"serverfault.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
    "          [\"elementaryos.stackexchange.com.jsonl.gz\", \"monero.stackexchange.com.jsonl.gz\", \"security.stackexchange.com.jsonl.gz\"],\n",
    "          [\"\"]]\n",
    "\n",
    "file_counts = []\n",
    "print('Downloading {:,} StackExchange GitHub datasets into s3://lodestone-rnd/data/'.format(len(stacks)))\n",
    "for i, stack in enumerate(stacks):\n",
    "    # get the names of all the files in the repository that are not unsafe\n",
    "    files = [file for file in os.listdir(f'/home/ec2-user/SageMaker/{stack}') if file.endswith(\".jsonl.gz\")==True if file not in unsafe[i]]\n",
    "    file_counts.append(len(files))\n",
    "    os.chdir(f'/home/ec2-user/SageMaker/{stack}')\n",
    "    print('Downloading dataset {} ({} files) ... '.format(stack, len(files)), end='', flush=True)\n",
    "    # sequentially pull each dataset from git lfs, stream it to S3, and then delete the local copy to free up disk memory\n",
    "    for file_name in files:\n",
    "        os.system(f'git lfs pull --include={file_name}')\n",
    "        os.system(f'aws s3 cp {file_name} s3://lodestone-rnd/data/{stack}/{file_name[:-9] + \".json.gz\"}')\n",
    "        os.remove(file_name)\n",
    "        os.system('rm -r .git/lfs/objects/*')\n",
    "        if len(os.listdir('.git/objects/pack')) == 4:\n",
    "            os.system('ls -t .git/objects/pack/* | head -2 | xargs rm --')\n",
    "    print('\\033[32m' + 'Done' + '\\033[0m')\n",
    "print(f'Total files uploaded: {sum(file_counts)}')\n",
    "\n",
    "print(\"\\n\")\n",
    "\n",
    "print('Downloading {:,} Reddit GitHub dataset into s3://lodestone-rnd/data/'.format(1))\n",
    "# get the names of all the files in the repository\n",
    "files = [file for file in os.listdir(f'/home/ec2-user/SageMaker/reddit-title-body') if file.endswith(\".jsonl.gz\")==True]\n",
    "os.chdir(f'/home/ec2-user/SageMaker/reddit-title-body')\n",
    "print('Downloading dataset {} ({} files) ... '.format(\"reddit-title-body\", len(files)), end='', flush=True)\n",
    "# sequentially pull each dataset from git lfs, stream it to S3, and then delete the local copy to free up disk memory\n",
    "for file_name in files:\n",
    "    os.system(f'git lfs pull --include={file_name}')\n",
    "    os.system(f'aws s3 cp {file_name} s3://lodestone-rnd/data/reddit-title-body/{file_name[:-9] + \".json.gz\"}')\n",
    "    os.remove(file_name)\n",
    "    os.system('rm -r .git/lfs/objects/*')\n",
    "    if len(os.listdir('.git/objects/pack')) == 4:\n",
    "            os.system('ls -t .git/objects/pack/* | head -2 | xargs rm --')\n",
    "print('\\033[32m' + 'Done' + '\\033[0m')\n",
    "print(f'Total files uploaded: {len(files)}')\n",
    "\n",
    "os.chdir('/home/ec2-user/SageMaker')\n",
    "\n",
    "print(\"\\n\")\n",
    "\n",
    "# DOWNLOAD HUGGINGFACE DATASETS (https://huggingface.co/datasets/sentence-transformers/embedding-training-data)\n",
    "\n",
    "# read dataset information from HuggingFace_datasets.tsv\n",
    "datasets = pd.read_csv(\n",
    "    'HuggingFace_datasets.tsv',\n",
    "    index_col=0,\n",
    "    sep='\\t',\n",
    "    dtype={\n",
    "          'Description': str,\n",
    "          'Size (#Pairs)': str,\n",
    "          'Performance': float,\n",
    "          'Download link': str,\n",
    "          'Source': str})\n",
    "datasets['Size (#Pairs)'] = datasets['Size (#Pairs)'].str.replace(',', '').astype(int)\n",
    "datasets = datasets.to_dict(orient='index')\n",
    "\n",
    "print('Downloading {:,} HuggingFace datasets into s3://lodestone-rnd/data/'.format(len(datasets)))\n",
    "\n",
    "# stream each of the datasets from the URL provided into S3\n",
    "# (note that S2ORC_citations_abstracts is larger than 50GB and therefore requires the expected size to be passed into the command line as well)\n",
    "for d in datasets.keys():\n",
    "    print('Downloading dataset {} ({:,} pairs) ... '.format(d, datasets[d]['Size (#Pairs)']), end='', flush=True)\n",
    "    if d == \"S2ORC_citations_abstracts\":\n",
    "        os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"} --expected-size 120259084288')\n",
    "    else:\n",
    "        os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"}')\n",
    "    print('\\033[32m' + 'Done' + '\\033[0m')\n",
    "\n",
    "print(\"\\n\")\n",
    "\n",
    "# DOWNLOAD GOOGLE SHEETS DATASETS (https://docs.google.com/spreadsheets/d/1vXJrIg38cEaKjOG5y4I4PQwAQFUmCkohbViJ9zj_Emg/edit#gid=0)\n",
    "\n",
    "# read dataset information from GoogleSheets_datasets.tsv\n",
    "datasets = pd.read_csv(\n",
    "    'GoogleSheets_datasets.tsv',\n",
    "    index_col=0,\n",
    "    sep='\\t',\n",
    "    dtype={\n",
    "          'Description': str,\n",
    "          'Size (#Pairs)': str,\n",
    "          'Performance': float,\n",
    "          'Download link': str,\n",
    "          'Source': str})\n",
    "datasets['Size (#Pairs)'] = datasets['Size (#Pairs)'].str.replace(',', '').astype(int)\n",
    "datasets = datasets.to_dict(orient='index')\n",
    "\n",
    "print('Downloading {:,} 1B+ Google Sheets datasets into s3://lodestone-rnd/data/'.format(len(datasets)))\n",
    "\n",
    "# stream each of the datasets from the URL provided into S3\n",
    "for d in datasets.keys():\n",
    "    print('Downloading dataset {} ({:,} pairs) ... '.format(d, datasets[d]['Size (#Pairs)']), end='', flush=True)\n",
    "    os.system(f'wget -qO- {datasets[d][\"Download link\"]} | aws s3 cp - s3://lodestone-rnd/data/{d + \".json.gz\"}')\n",
    "    print('\\033[32m' + 'Done' + '\\033[0m')\n",
    "\n",
    "print(\"\\n\")\n",
    "    \n",
    "print(f'Successfully downloaded 50 datasets and {621+12+9+36} files into s3://lodestone-rnd/data/')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "216d4564-6b69-4688-94ec-a67287134a2d",
   "metadata": {
    "tags": []
   },
   "outputs": [],
   "source": [
    "# clean up (remove the cloned repositories)\n",
    "import shutil\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_title_body_jsonl\")\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_titlebody_best_voted_answer_jsonl\")\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_title_best_voted_answer_jsonl\")\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/stackexchange_titlebody_best_and_down_voted_answer_jsonl\")\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/reddit-title-body\")\n",
    "shutil.rmtree(\"/home/ec2-user/SageMaker/1B_sentence_embeddings\")"
   ]
  }
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