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from setuptools import find_packages, setup
setup(
name='TransfoRNA',
version='0.0.1',
description='TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy',
url='https://github.com/gitHBDX/TransfoRNA',
author='YasserTaha,JuliaJehn',
author_email='ytaha@hb-dx.com,jjehn@hb-dx.com,tsikosek@hb-dx.com',
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: Biological Researchers',
'License :: OSI Approved :: MIT License',
'Programming Language :: Python :: 3.9',
],
packages=find_packages(include=['transforna', 'transforna.*']),
install_requires=[
"anndata==0.8.0",
"dill==0.3.6",
"hydra-core==1.3.0",
"imbalanced-learn==0.9.1",
"matplotlib==3.5.3",
"numpy==1.22.3",
"omegaconf==2.2.2",
"pandas==1.5.2",
"plotly==5.10.0",
"PyYAML==6.0",
"rich==12.6.0",
"viennarna>=2.5.0a5",
"scanpy==1.9.1",
"scikit_learn==1.2.0",
"skorch==0.12.1",
"torch==1.10.1",
"tensorboard==2.16.2",
"Levenshtein==0.21.0"
],
python_requires='>=3.9',
#move yaml files to package
package_data={'': ['*.yaml']},
)
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