SARSCov2_fragments / README.md
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metadata
license: mit
tags:
  - biology

Model Details

Model Description

  • Developed by: [More Information Needed]

  • Order the SARS Cov2 sequences by environmental changes, mainly the rate of change of the sunshine duration.

Model Sources [optional]

Uses

Classificaion of the SARS-Cov2 sequences and determination of mutational hotspots.

How to Get Started with the Model

Demo : Kaggle

Training Details

Training Data and test data

Stacked frequence of k-mers up to the 4-mer obtained from full size SARS-Cov2 sequences. NCBI sequence ID of each sequence for each fold is on the csvfile

Model Architecture and Objective

MLP VAE and mse loss

Demo : Kaggle

Hardware

GPU NVIDIA Corporation TU116 [GeForce GTX 1660 Ti]

More Information [optional]

Further details at Substack