Update README.md

filtered predicted vessels outside the predicted liver parenchyma region

changed tqdm for vessel seg for consistency

Merge branch 'master' of https://github.com/andreped/livermask into master

run batch mode workflow instead

Update README.md

inference workflow runs successfully across all operating systems. Added --vessels to test chainer on the cloud

wrong path

updated version. Added inference test

mp fix

potential multiprocessing fix for macos

fix for chainer inference when cupy is not installed and cpu is not specific

working solution

typo

potential fix for path

tried recursive include

tried adding flag to fix setup

typo

added manifest file to include yml file

added missing dependency

fix for deadlock issue on macOSX

Update README.md

Update README.md

Update README.md

Update README.md

Update README.md

Update README.md

removed install command

removed silly argument thingy. Refactored

typo

debugging setup

refactoring setup file

Merge branch 'master' of https://github.com/andreped/livermask into master

minor bug fix relevant for enabling GPU when installing

Update README.md

Update README.md

more refactoring

refactoring, adding informative prints for liver vessel segmentation in log, which supports verbose mode

finally working. Now the CLI properly installs using pip and it can be used without any dependency issues across all relevant operating systems

removed wrong import

tried importing Config directly, instead of the script

test

typo

worked, now have to add similar fix for all scripts

added '.' to paths when importing

minor path fix for packages

removed redundant copy of package

new install test

tested new package include

tried removed redundant py_module