|
name: Build |
|
|
|
on: |
|
push: |
|
branches: |
|
- "*" |
|
pull_request: |
|
branches: |
|
- "*" |
|
workflow_dispatch: |
|
|
|
jobs: |
|
build: |
|
runs-on: ubuntu-20.04 |
|
steps: |
|
- uses: actions/checkout@v1 |
|
- name: Set up Python 3.7 |
|
uses: actions/setup-python@v2 |
|
with: |
|
python-version: 3.7 |
|
|
|
- name: Install dependencies |
|
run: pip install wheel setuptools |
|
|
|
- name: Build wheel |
|
run: python setup.py bdist_wheel --universal |
|
|
|
- name: Upload Python wheel |
|
uses: actions/upload-artifact@v2 |
|
with: |
|
name: Python wheel |
|
path: ${{github.workspace}}/dist/livermask-*.whl |
|
if-no-files-found: error |
|
|
|
test: |
|
needs: build |
|
runs-on: ${{ matrix.os }} |
|
strategy: |
|
|
|
matrix: |
|
os: [ windows-2019, ubuntu-20.04, macos-11 ] |
|
python-version: [ 3.7 ] |
|
|
|
steps: |
|
- uses: actions/checkout@v1 |
|
- name: Set up Python ${{ matrix.python-version }} |
|
uses: actions/setup-python@v2 |
|
with: |
|
python-version: ${{ matrix.python-version }} |
|
|
|
- name: Download artifact |
|
uses: actions/download-artifact@master |
|
with: |
|
name: "Python wheel" |
|
|
|
- name: Install wheel |
|
run: pip install --find-links=. livermask-* |
|
shell: bash |
|
|
|
- name: Test CLI |
|
run: livermask --help |
|
|
|
- name: Download test sample |
|
run: | |
|
pip install gdown==4.4.0 |
|
mkdir samples |
|
mkdir results |
|
cd samples |
|
gdown https://drive.google.com/uc?id=1shjSrFjS4PHE5sTku30PZTLPZpGu24o3 |
|
gdown https://drive.google.com/uc?id=1bNmls5o0Rxw5HvBF1IYnEzmpysYJaywN |
|
|
|
- name: Test inference .nii |
|
run: | |
|
livermask --input samples --output results --verbose --vessels |
|
|
