| # Notebooks | |
| The following is a short description of the Jupyter notebooks that are available in this repository: | |
| - [Data curation](data_curation.ipynb) | |
| - [Generating cell line embeddings](cell_line_embeddings.ipynb) | |
| - [Finding the best Morgan fingerprint parameters via Optuna](best_fingerprint_search.ipynb) | |
| - [Comparing deep learning model (DNN) and XGBoost (XGB) performance](compare_dnn_xgb_distributions.ipynb) | |
| - Plotting of [paper results](plot_experimental_results.ipynb) and [dataset information](plot_dataset_info.ipynb) | |
| - A [tutorial](protac_degradation_predictor_tutorial.ipynb) on how to use the pretrained models for predicting degradation activity |