models/InflammatoryMarkers/TNF/config.yml

target:
- TNF_log
continuous_cols:
- cg25988106
- cg04209460
- cg02073775
- cg10745498
- cg12869097
- cg00837987
- cg17514291
- cg11498487
- cg21862099
- cg19658812
- cg02642126
- cg24506221
- cg08134859
- cg18817426
- cg05660889
- cg25515269
- cg03740682
- cg07903144
- cg15638768
- cg26420795
- cg05541267
- cg03849161
- cg03448915
- cg11008866
- cg09213165
- cg25404033
- cg08429705
- cg09941542
- cg10199763
- cg00997262
- cg06070229
- cg13137765
- cg20678377
- cg18325622
- cg07691761
- cg24911545
- cg08061076
- cg03277658
- cg01404750
- cg08899895
- cg01311955
- cg24575128
- cg14773480
- cg07153098
- cg03354476
- cg14658607
- cg01306747
- cg01450566
- cg03624661
- cg12974599
- cg16825014
- cg14860219
- cg00812839
- cg09163477
- cg04787317
- cg10985055
- cg19071460
- cg27456407
- cg00815644
- cg05056901
- cg21649580
- cg12641240
- cg25529393
- cg22998476
- cg17124583
- cg20459037
- cg01570069
- cg24089118
- cg11409295
- cg08819022
- cg07192612
- cg10442056
- cg20841134
- cg25252977
- cg23556715
- cg06623057
- cg07387471
- cg04250904
- cg01637548
- cg00745735
- cg26262710
- cg21346639
- cg01039401
- cg23475489
- cg06843687
- cg22212542
- cg12803694
- cg27080119
- cg26677098
- cg18464726
- cg19528830
- cg20142890
- cg19776793
- cg26237681
- cg01914455
- cg22613968
- cg20374595
- cg04747445
- cg15107871
- cg22271305
categorical_cols: []
date_columns: []
encode_date_columns: true
validation_split: 0.25
continuous_feature_transform: null
normalize_continuous_features: true
quantile_noise: 0
num_workers: 0
pin_memory: true
handle_unknown_categories: true
handle_missing_values: true
task: regression
head: LinearHead
head_config:
  layers: ''
  activation: ReLU
  dropout: 0.2285542420146859
  use_batch_norm: false
  initialization: xavier
embedding_dims: null
embedding_dropout: 0.0
batch_norm_continuous_input: true
learning_rate: 0.17487782589243875
loss: L1Loss
metrics:
- mean_absolute_error
- pearson_corrcoef
metrics_prob_input:
- false
- false
metrics_params:
- {}
- {}
target_range: null
virtual_batch_size: null
seed: 1337
_module_src: models.gandalf
_model_name: GANDALFModel
_backbone_name: GANDALFBackbone
_config_name: GANDALFConfig
gflu_stages: 19
gflu_dropout: 0.16948013039246693
gflu_feature_init_sparsity: 0.3696056814180491
learnable_sparsity: true
batch_size: 1024
data_aware_init_batch_size: 2000
fast_dev_run: false
max_epochs: 1000
min_epochs: 1
max_time: null
accelerator: auto
devices: -1
devices_list: null
accumulate_grad_batches: 1
auto_lr_find: false
auto_select_gpus: true
check_val_every_n_epoch: 1
gradient_clip_val: 0.0
overfit_batches: 0.0
deterministic: false
profiler: null
early_stopping: valid_loss
early_stopping_min_delta: 1.0e-06
early_stopping_mode: min
early_stopping_patience: 50
early_stopping_kwargs: {}
checkpoints: valid_loss
checkpoints_path: C:/YandexDisk/Work/bbd/immunology/003_EpImAge/imp_source(imm)_method(knn)_params(5)/no_harm/mrmr_100/TNF/pytorch_tabular
checkpoints_every_n_epochs: 5
checkpoints_name: null
checkpoints_mode: min
checkpoints_save_top_k: 1
checkpoints_kwargs: {}
load_best: true
track_grad_norm: -1
progress_bar: none
precision: 32
trainer_kwargs: {}
optimizer: Adam
optimizer_params:
  weight_decay: 1.3180504373061107e-05
lr_scheduler: ReduceLROnPlateau
lr_scheduler_params:
  mode: min
  factor: 0.6433535924985887
  patience: 25
  threshold: 0.0001
lr_scheduler_monitor_metric: valid_loss
enable_checkpointing: true