reference transcripts update
a6ef2fa
Andrew Stirn
commited on
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Commit History
updated tiger.py
d5e0e34
Andrew Stirn
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single prediction bug fix
12459b9
Andrew Stirn
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delete transcript ID for manually uploaded sequences
21a4f44
Andrew Stirn
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titration bug fix
f230aaf
Andrew Stirn
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calibration active for webtool
699c100
Andrew Stirn
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tiger transform back online
a2e6f51
Andrew Stirn
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before and after calibration checks out
0b0f412
Andrew Stirn
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calibration working as expected
0590665
Andrew Stirn
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bug fix for zero off-targets
ab4b6b4
Andrew Stirn
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small index issue
cce961e
Andrew Stirn
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common code to finalize tables
6e3a126
Andrew Stirn
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titration mode!
42a3866
Andrew Stirn
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small bug from last commit
ccfd7e1
Andrew Stirn
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some changes needed to support titration
546d4e5
Andrew Stirn
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cleanup
2e86d75
Andrew Stirn
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very close
e43faaa
Andrew Stirn
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progress
0178c63
Andrew Stirn
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tiger.py changes in support of app.py
5b03846
Andrew Stirn
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tiger.py finishing touches
4da7dd2
Andrew Stirn
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cleanup
03279e4
Andrew Stirn
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cleanup off-target table
7932f13
Andrew Stirn
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cleanup
7233b48
Andrew Stirn
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cleanup and bug fixes
79e1e8e
Andrew Stirn
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simplified code
ecb653b
Andrew Stirn
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massive cleanup with better table columns
9ccfeb4
Andrew Stirn
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progress
da98162
Andrew Stirn
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web tool titration clipping slightly wider than testing
d99c64e
Andrew Stirn
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moved titration ratio function to web code
47e7aeb
Andrew Stirn
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progress
e78fda7
Andrew Stirn
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unit-interval tiger model with web tool output transformation
cf79aee
Andrew Stirn
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minor fix
fda1178
Andrew Stirn
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ability to run locally
a2591b6
Andrew Stirn
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prevent empty off target crash
c650039
Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main
56f2fde
prevent crash when off target is empty and add option for on target only
99a0d01
Merge branch 'main' of https://huggingface.co/spaces/Knowles-Lab/tiger into main
6009ef4
Andrew Stirn
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flip guide sequences for biologists
8c452e8
Andrew Stirn
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Cleaning up previous fasta files
9f169cd
enable status bar
89ee386
missed fix
6216d88
Andrew Stirn
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memory leak plugged
0450f78
Andrew Stirn
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corrections
6727689
Andrew Stirn
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fasta directory optimizations
f311bf4
Andrew Stirn
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support for app
89ffb34
Andrew Stirn
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find top guides for all transcripts and then scan off-targets simultaneously
f57c1f6
Andrew Stirn
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load_transcripts function
d78d0d1
Andrew Stirn
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off-targets for gencode.v19.lncRNA_transcripts.fa.gz
e38af10
Andrew Stirn
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insufficient target context cases handled
a690e02
Andrew Stirn
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back to old test case
cbbf8c9
Andrew Stirn
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