Spaces:
Running
on
CPU Upgrade
Running
on
CPU Upgrade
Andrew Stirn
commited on
Commit
•
7b58b1f
1
Parent(s):
ff943ce
results clear on rerun
Browse files
app.py
CHANGED
@@ -92,63 +92,61 @@ if __name__ == '__main__':
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st.session_state.off_target = None
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# title and documentation
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st.title('TIGER Cas13 Efficacy Prediction')
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# mode selection
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)
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# transcript entry
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disabled=st.session_state.transcripts is not None
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)
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if st.session_state.entry_method == ENTRY_METHODS['manual']:
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st.text_input(
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label='Enter a target transcript:',
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key='manual_entry',
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placeholder='Upper or lower case',
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disabled=st.session_state.transcripts is not None
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)
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elif st.session_state.entry_method == ENTRY_METHODS['fasta']:
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st.file_uploader(
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label='Upload a fasta file:',
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key='fasta_entry',
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disabled=st.session_state.transcripts is not None
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)
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# runtime
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with st.container():
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st.button(label='Get predictions!', on_click=initiate_run, disabled=st.session_state.transcripts is not None)
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progress = st.empty()
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#
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st.write('On-target predictions:', st.session_state.on_target)
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st.download_button(
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label='Download on-target predictions',
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@@ -156,9 +154,13 @@ if __name__ == '__main__':
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file_name='on_target.csv',
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mime='text/csv'
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)
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if len(st.session_state.off_target) > 0:
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st.write('Off-target predictions:', st.session_state.off_target)
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st.download_button(
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@@ -169,6 +171,8 @@ if __name__ == '__main__':
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)
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else:
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st.write('We did not find any off-target effects!')
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# keep trying to run model until we clear inputs (streamlit UI changes can induce race-condition reruns)
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if st.session_state.transcripts is not None:
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st.session_state.off_target = None
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# title and documentation
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st.title('TIGER Cas13 Efficacy Prediction')
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# mode selection
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col1, col2 = st.columns([0.65, 0.35])
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with col1:
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st.radio(
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label='What do you want to predict?',
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options=tuple(tiger.RUN_MODES.values()),
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key='mode',
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on_change=mode_change_callback,
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disabled=st.session_state.transcripts is not None,
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)
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with col2:
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st.checkbox(
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label='Find off-target effects (slow)',
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key='check_off_targets',
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disabled=st.session_state.disable_off_target_checkbox or st.session_state.transcripts is not None
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)
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# transcript entry
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st.selectbox(
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label='How would you like to provide transcript(s) of interest?',
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options=ENTRY_METHODS.values(),
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key='entry_method',
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disabled=st.session_state.transcripts is not None
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)
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if st.session_state.entry_method == ENTRY_METHODS['manual']:
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st.text_input(
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label='Enter a target transcript:',
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key='manual_entry',
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placeholder='Upper or lower case',
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disabled=st.session_state.transcripts is not None
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)
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elif st.session_state.entry_method == ENTRY_METHODS['fasta']:
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st.file_uploader(
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label='Upload a fasta file:',
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key='fasta_entry',
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disabled=st.session_state.transcripts is not None
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)
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# let's go!
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st.button(label='Get predictions!', on_click=initiate_run, disabled=st.session_state.transcripts is not None)
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progress = st.empty()
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# input error
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error = st.empty()
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if st.session_state.input_error is not None:
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error.error(st.session_state.input_error, icon="🚨")
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else:
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error.empty()
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# on-target results
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on_target_results = st.empty()
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if st.session_state.on_target is not None:
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with on_target_results.container():
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st.write('On-target predictions:', st.session_state.on_target)
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st.download_button(
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label='Download on-target predictions',
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file_name='on_target.csv',
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mime='text/csv'
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)
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else:
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on_target_results.empty()
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# off-target results
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off_target_results = st.empty()
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if st.session_state.off_target is not None:
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with off_target_results.container():
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if len(st.session_state.off_target) > 0:
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st.write('Off-target predictions:', st.session_state.off_target)
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st.download_button(
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)
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else:
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st.write('We did not find any off-target effects!')
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else:
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off_target_results.empty()
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# keep trying to run model until we clear inputs (streamlit UI changes can induce race-condition reruns)
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if st.session_state.transcripts is not None:
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