Andrew Stirn commited on
Commit
6216d88
·
1 Parent(s): e0618e1

missed fix

Browse files
Files changed (1) hide show
  1. tiger.py +1 -1
tiger.py CHANGED
@@ -35,7 +35,7 @@ def load_transcripts(fasta_files):
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  with gzip.open(file, 'rt') as f:
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  df = pd.DataFrame([(t.id, str(t.seq)) for t in SeqIO.parse(f, 'fasta')], columns=['id', 'seq'])
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  else:
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- df = pd.DataFrame([(t.id, str(t.seq)) for t in SeqIO.parse(f, 'fasta')], columns=['id', 'seq'])
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  except Exception as e:
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  print(e, 'while loading', file)
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  continue
 
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  with gzip.open(file, 'rt') as f:
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  df = pd.DataFrame([(t.id, str(t.seq)) for t in SeqIO.parse(f, 'fasta')], columns=['id', 'seq'])
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  else:
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+ df = pd.DataFrame([(t.id, str(t.seq)) for t in SeqIO.parse(file, 'fasta')], columns=['id', 'seq'])
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  except Exception as e:
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  print(e, 'while loading', file)
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  continue