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| { | |
| "validate#dataset#cache_rate": 0, | |
| "validate#postprocessing": { | |
| "_target_": "Compose", | |
| "transforms": [ | |
| { | |
| "_target_": "Activationsd", | |
| "keys": "pred", | |
| "softmax": true | |
| }, | |
| { | |
| "_target_": "AsDiscreted", | |
| "keys": [ | |
| "pred", | |
| "label" | |
| ], | |
| "argmax": [ | |
| true, | |
| false | |
| ], | |
| "to_onehot": 4 | |
| }, | |
| { | |
| "_target_": "ToTensord", | |
| "keys": [ | |
| "pred", | |
| "label" | |
| ], | |
| "device": "@device" | |
| }, | |
| { | |
| "_target_": "SaveImaged", | |
| "_disabled_": true, | |
| "keys": "pred", | |
| "meta_keys": "pred_meta_dict", | |
| "output_dir": "@output_dir", | |
| "output_ext": ".json" | |
| } | |
| ] | |
| }, | |
| "validate#handlers": [ | |
| { | |
| "_target_": "CheckpointLoader", | |
| "load_path": "$@ckpt_dir + '/model.pt'", | |
| "load_dict": { | |
| "model": "@network" | |
| } | |
| }, | |
| { | |
| "_target_": "StatsHandler", | |
| "iteration_log": false | |
| }, | |
| { | |
| "_target_": "MetricsSaver", | |
| "save_dir": "@output_dir", | |
| "metrics": [ | |
| "val_f1", | |
| "val_accuracy" | |
| ], | |
| "metric_details": [ | |
| "val_f1" | |
| ], | |
| "batch_transform": "$monai.handlers.from_engine(['image_meta_dict'])", | |
| "summary_ops": "*" | |
| } | |
| ], | |
| "evaluating": [ | |
| "$import sys", | |
| "$sys.path.append(@bundle_root)", | |
| "$setattr(torch.backends.cudnn, 'benchmark', True)", | |
| "$import scripts", | |
| "$monai.data.register_writer('json', scripts.ClassificationWriter)", | |
| "$@validate#evaluator.run()" | |
| ] | |
| } | |