Spaces:
Runtime error
Runtime error
AmelieSchreiber
commited on
Commit
•
00d2cb3
1
Parent(s):
1ee0fa8
Update app.py
Browse files
app.py
CHANGED
@@ -65,22 +65,23 @@ def generate_heatmap(protein_sequence, start_pos=1, end_pos=None):
|
|
65 |
plt.close()
|
66 |
return temp_file
|
67 |
|
68 |
-
def heatmap_interface(sequence, start, end
|
|
|
|
|
|
|
|
|
|
|
69 |
# If end is None or greater than sequence length, set it to sequence length
|
70 |
-
if end is None or end > len(sequence):
|
71 |
end = len(sequence)
|
72 |
-
state['end'] = end # Update state
|
73 |
|
74 |
# Ensure start is within bounds
|
75 |
-
if start < 1:
|
76 |
return "Start position is out of bounds."
|
77 |
|
78 |
# Generate heatmap
|
79 |
heatmap_path = generate_heatmap(sequence, start, end)
|
80 |
-
return heatmap_path
|
81 |
-
|
82 |
-
# Initialize state with None for end position
|
83 |
-
initial_state = {'end': None}
|
84 |
|
85 |
# Define the Gradio interface
|
86 |
iface = gr.Interface(
|
@@ -88,16 +89,11 @@ iface = gr.Interface(
|
|
88 |
inputs=[
|
89 |
gr.Textbox(lines=2, placeholder="Enter Protein Sequence Here..."),
|
90 |
gr.Number(label="Start Position", value=1),
|
91 |
-
gr.Number(label="End Position")
|
92 |
],
|
93 |
-
outputs=
|
94 |
-
"image",
|
95 |
-
gr.State()
|
96 |
-
],
|
97 |
-
state=initial_state,
|
98 |
live=True
|
99 |
)
|
100 |
|
101 |
# Run the Gradio app
|
102 |
-
iface.launch()
|
103 |
-
|
|
|
65 |
plt.close()
|
66 |
return temp_file
|
67 |
|
68 |
+
def heatmap_interface(sequence, start, end=None):
|
69 |
+
# Convert start and end to integers
|
70 |
+
start = int(start)
|
71 |
+
if end is not None:
|
72 |
+
end = int(end)
|
73 |
+
|
74 |
# If end is None or greater than sequence length, set it to sequence length
|
75 |
+
if end is None or end > len(sequence) or end <= 0:
|
76 |
end = len(sequence)
|
|
|
77 |
|
78 |
# Ensure start is within bounds
|
79 |
+
if start < 1 or start > len(sequence):
|
80 |
return "Start position is out of bounds."
|
81 |
|
82 |
# Generate heatmap
|
83 |
heatmap_path = generate_heatmap(sequence, start, end)
|
84 |
+
return heatmap_path
|
|
|
|
|
|
|
85 |
|
86 |
# Define the Gradio interface
|
87 |
iface = gr.Interface(
|
|
|
89 |
inputs=[
|
90 |
gr.Textbox(lines=2, placeholder="Enter Protein Sequence Here..."),
|
91 |
gr.Number(label="Start Position", value=1),
|
92 |
+
gr.Number(label="End Position") # No default value needed
|
93 |
],
|
94 |
+
outputs="image",
|
|
|
|
|
|
|
|
|
95 |
live=True
|
96 |
)
|
97 |
|
98 |
# Run the Gradio app
|
99 |
+
iface.launch()
|
|