Upload 15 files
Browse files- README.md +57 -0
- added_tokens.json +9 -0
- all_results.json +16 -0
- config.json +39 -0
- eval_results.json +10 -0
- generation_config.json +6 -0
- merges.txt +0 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +60 -0
- tokenizer.json +0 -0
- tokenizer_config.json +82 -0
- train_results.json +9 -0
- trainer_state.json +133 -0
- training_args.bin +3 -0
- vocab.json +0 -0
README.md
ADDED
@@ -0,0 +1,57 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
---
|
2 |
+
license: apache-2.0
|
3 |
+
base_model: nferruz/ProtGPT2
|
4 |
+
tags:
|
5 |
+
- generated_from_trainer
|
6 |
+
metrics:
|
7 |
+
- accuracy
|
8 |
+
model-index:
|
9 |
+
- name: model_output
|
10 |
+
results: []
|
11 |
+
---
|
12 |
+
|
13 |
+
<!-- This model card has been generated automatically according to the information the Trainer had access to. You
|
14 |
+
should probably proofread and complete it, then remove this comment. -->
|
15 |
+
|
16 |
+
# model_output
|
17 |
+
|
18 |
+
This model is a fine-tuned version of [nferruz/ProtGPT2](https://huggingface.co/nferruz/ProtGPT2) on an unknown dataset.
|
19 |
+
It achieves the following results on the evaluation set:
|
20 |
+
- Loss: 14.2921
|
21 |
+
- Accuracy: 0.2671
|
22 |
+
|
23 |
+
## Model description
|
24 |
+
|
25 |
+
More information needed
|
26 |
+
|
27 |
+
## Intended uses & limitations
|
28 |
+
|
29 |
+
More information needed
|
30 |
+
|
31 |
+
## Training and evaluation data
|
32 |
+
|
33 |
+
More information needed
|
34 |
+
|
35 |
+
## Training procedure
|
36 |
+
|
37 |
+
### Training hyperparameters
|
38 |
+
|
39 |
+
The following hyperparameters were used during training:
|
40 |
+
- learning_rate: 0.001
|
41 |
+
- train_batch_size: 8
|
42 |
+
- eval_batch_size: 8
|
43 |
+
- seed: 42
|
44 |
+
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
|
45 |
+
- lr_scheduler_type: linear
|
46 |
+
- num_epochs: 200.0
|
47 |
+
|
48 |
+
### Training results
|
49 |
+
|
50 |
+
|
51 |
+
|
52 |
+
### Framework versions
|
53 |
+
|
54 |
+
- Transformers 4.41.0.dev0
|
55 |
+
- Pytorch 2.3.0+cu121
|
56 |
+
- Datasets 2.19.1
|
57 |
+
- Tokenizers 0.19.1
|
added_tokens.json
ADDED
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"<PAD>": 50263,
|
3 |
+
"<endoftext>": 50262,
|
4 |
+
"<startoftext>": 50261,
|
5 |
+
"LABEL:": 50258,
|
6 |
+
"NEGATIVE": 50260,
|
7 |
+
"POSITIVE": 50259,
|
8 |
+
"SEQUENCE:": 50257
|
9 |
+
}
|
all_results.json
ADDED
@@ -0,0 +1,16 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"epoch": 200.0,
|
3 |
+
"eval_accuracy": 0.26709025741283804,
|
4 |
+
"eval_loss": 14.292082786560059,
|
5 |
+
"eval_runtime": 4.0475,
|
6 |
+
"eval_samples": 30,
|
7 |
+
"eval_samples_per_second": 7.412,
|
8 |
+
"eval_steps_per_second": 0.988,
|
9 |
+
"perplexity": 1610544.3518588347,
|
10 |
+
"total_flos": 1.175134666752e+17,
|
11 |
+
"train_loss": 0.14310694140546462,
|
12 |
+
"train_runtime": 11074.5138,
|
13 |
+
"train_samples": 135,
|
14 |
+
"train_samples_per_second": 2.438,
|
15 |
+
"train_steps_per_second": 0.614
|
16 |
+
}
|
config.json
ADDED
@@ -0,0 +1,39 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"_name_or_path": "nferruz/ProtGPT2",
|
3 |
+
"activation_function": "gelu_new",
|
4 |
+
"architectures": [
|
5 |
+
"GPT2LMHeadModel"
|
6 |
+
],
|
7 |
+
"attn_pdrop": 0.1,
|
8 |
+
"bos_token_id": 0,
|
9 |
+
"embd_pdrop": 0.1,
|
10 |
+
"eos_token_id": 0,
|
11 |
+
"initializer_range": 0.02,
|
12 |
+
"layer_norm_epsilon": 1e-05,
|
13 |
+
"model_type": "gpt2",
|
14 |
+
"n_ctx": 1024,
|
15 |
+
"n_embd": 1280,
|
16 |
+
"n_head": 20,
|
17 |
+
"n_inner": null,
|
18 |
+
"n_layer": 36,
|
19 |
+
"n_positions": 1024,
|
20 |
+
"reorder_and_upcast_attn": false,
|
21 |
+
"resid_pdrop": 0.1,
|
22 |
+
"scale_attn_by_inverse_layer_idx": false,
|
23 |
+
"scale_attn_weights": true,
|
24 |
+
"summary_activation": null,
|
25 |
+
"summary_first_dropout": 0.1,
|
26 |
+
"summary_proj_to_labels": true,
|
27 |
+
"summary_type": "cls_index",
|
28 |
+
"summary_use_proj": true,
|
29 |
+
"task_specific_params": {
|
30 |
+
"text-generation": {
|
31 |
+
"do_sample": true,
|
32 |
+
"max_length": 50
|
33 |
+
}
|
34 |
+
},
|
35 |
+
"torch_dtype": "float32",
|
36 |
+
"transformers_version": "4.41.0.dev0",
|
37 |
+
"use_cache": true,
|
38 |
+
"vocab_size": 50264
|
39 |
+
}
|
eval_results.json
ADDED
@@ -0,0 +1,10 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"epoch": 200.0,
|
3 |
+
"eval_accuracy": 0.26709025741283804,
|
4 |
+
"eval_loss": 14.292082786560059,
|
5 |
+
"eval_runtime": 4.0475,
|
6 |
+
"eval_samples": 30,
|
7 |
+
"eval_samples_per_second": 7.412,
|
8 |
+
"eval_steps_per_second": 0.988,
|
9 |
+
"perplexity": 1610544.3518588347
|
10 |
+
}
|
generation_config.json
ADDED
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"_from_model_config": true,
|
3 |
+
"bos_token_id": 0,
|
4 |
+
"eos_token_id": 0,
|
5 |
+
"transformers_version": "4.41.0.dev0"
|
6 |
+
}
|
merges.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
pytorch_model.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:d26a7841afbb9a07d9389e7a7a5ec820f904a9930b8db11d9d4c92b4003aadbe
|
3 |
+
size 3096298970
|
special_tokens_map.json
ADDED
@@ -0,0 +1,60 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"additional_special_tokens": [
|
3 |
+
{
|
4 |
+
"content": "SEQUENCE:",
|
5 |
+
"lstrip": false,
|
6 |
+
"normalized": false,
|
7 |
+
"rstrip": false,
|
8 |
+
"single_word": false
|
9 |
+
},
|
10 |
+
{
|
11 |
+
"content": "LABEL:",
|
12 |
+
"lstrip": false,
|
13 |
+
"normalized": false,
|
14 |
+
"rstrip": false,
|
15 |
+
"single_word": false
|
16 |
+
},
|
17 |
+
{
|
18 |
+
"content": "POSITIVE",
|
19 |
+
"lstrip": false,
|
20 |
+
"normalized": false,
|
21 |
+
"rstrip": false,
|
22 |
+
"single_word": false
|
23 |
+
},
|
24 |
+
{
|
25 |
+
"content": "NEGATIVE",
|
26 |
+
"lstrip": false,
|
27 |
+
"normalized": false,
|
28 |
+
"rstrip": false,
|
29 |
+
"single_word": false
|
30 |
+
}
|
31 |
+
],
|
32 |
+
"bos_token": {
|
33 |
+
"content": "<startoftext>",
|
34 |
+
"lstrip": false,
|
35 |
+
"normalized": false,
|
36 |
+
"rstrip": false,
|
37 |
+
"single_word": false
|
38 |
+
},
|
39 |
+
"eos_token": {
|
40 |
+
"content": "<endoftext>",
|
41 |
+
"lstrip": false,
|
42 |
+
"normalized": false,
|
43 |
+
"rstrip": false,
|
44 |
+
"single_word": false
|
45 |
+
},
|
46 |
+
"pad_token": {
|
47 |
+
"content": "<PAD>",
|
48 |
+
"lstrip": false,
|
49 |
+
"normalized": false,
|
50 |
+
"rstrip": false,
|
51 |
+
"single_word": false
|
52 |
+
},
|
53 |
+
"unk_token": {
|
54 |
+
"content": "<|endoftext|>",
|
55 |
+
"lstrip": false,
|
56 |
+
"normalized": true,
|
57 |
+
"rstrip": false,
|
58 |
+
"single_word": false
|
59 |
+
}
|
60 |
+
}
|
tokenizer.json
ADDED
The diff for this file is too large to render.
See raw diff
|
|
tokenizer_config.json
ADDED
@@ -0,0 +1,82 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"add_prefix_space": false,
|
3 |
+
"added_tokens_decoder": {
|
4 |
+
"0": {
|
5 |
+
"content": "<|endoftext|>",
|
6 |
+
"lstrip": false,
|
7 |
+
"normalized": true,
|
8 |
+
"rstrip": false,
|
9 |
+
"single_word": false,
|
10 |
+
"special": true
|
11 |
+
},
|
12 |
+
"50257": {
|
13 |
+
"content": "SEQUENCE:",
|
14 |
+
"lstrip": false,
|
15 |
+
"normalized": false,
|
16 |
+
"rstrip": false,
|
17 |
+
"single_word": false,
|
18 |
+
"special": true
|
19 |
+
},
|
20 |
+
"50258": {
|
21 |
+
"content": "LABEL:",
|
22 |
+
"lstrip": false,
|
23 |
+
"normalized": false,
|
24 |
+
"rstrip": false,
|
25 |
+
"single_word": false,
|
26 |
+
"special": true
|
27 |
+
},
|
28 |
+
"50259": {
|
29 |
+
"content": "POSITIVE",
|
30 |
+
"lstrip": false,
|
31 |
+
"normalized": false,
|
32 |
+
"rstrip": false,
|
33 |
+
"single_word": false,
|
34 |
+
"special": true
|
35 |
+
},
|
36 |
+
"50260": {
|
37 |
+
"content": "NEGATIVE",
|
38 |
+
"lstrip": false,
|
39 |
+
"normalized": false,
|
40 |
+
"rstrip": false,
|
41 |
+
"single_word": false,
|
42 |
+
"special": true
|
43 |
+
},
|
44 |
+
"50261": {
|
45 |
+
"content": "<startoftext>",
|
46 |
+
"lstrip": false,
|
47 |
+
"normalized": false,
|
48 |
+
"rstrip": false,
|
49 |
+
"single_word": false,
|
50 |
+
"special": true
|
51 |
+
},
|
52 |
+
"50262": {
|
53 |
+
"content": "<endoftext>",
|
54 |
+
"lstrip": false,
|
55 |
+
"normalized": false,
|
56 |
+
"rstrip": false,
|
57 |
+
"single_word": false,
|
58 |
+
"special": true
|
59 |
+
},
|
60 |
+
"50263": {
|
61 |
+
"content": "<PAD>",
|
62 |
+
"lstrip": false,
|
63 |
+
"normalized": false,
|
64 |
+
"rstrip": false,
|
65 |
+
"single_word": false,
|
66 |
+
"special": true
|
67 |
+
}
|
68 |
+
},
|
69 |
+
"additional_special_tokens": [
|
70 |
+
"SEQUENCE:",
|
71 |
+
"LABEL:",
|
72 |
+
"POSITIVE",
|
73 |
+
"NEGATIVE"
|
74 |
+
],
|
75 |
+
"bos_token": "<startoftext>",
|
76 |
+
"clean_up_tokenization_spaces": true,
|
77 |
+
"eos_token": "<endoftext>",
|
78 |
+
"model_max_length": 1000000000000000019884624838656,
|
79 |
+
"pad_token": "<PAD>",
|
80 |
+
"tokenizer_class": "GPT2Tokenizer",
|
81 |
+
"unk_token": "<|endoftext|>"
|
82 |
+
}
|
train_results.json
ADDED
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"epoch": 200.0,
|
3 |
+
"total_flos": 1.175134666752e+17,
|
4 |
+
"train_loss": 0.14310694140546462,
|
5 |
+
"train_runtime": 11074.5138,
|
6 |
+
"train_samples": 135,
|
7 |
+
"train_samples_per_second": 2.438,
|
8 |
+
"train_steps_per_second": 0.614
|
9 |
+
}
|
trainer_state.json
ADDED
@@ -0,0 +1,133 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"best_metric": null,
|
3 |
+
"best_model_checkpoint": null,
|
4 |
+
"epoch": 200.0,
|
5 |
+
"eval_steps": 500,
|
6 |
+
"global_step": 6800,
|
7 |
+
"is_hyper_param_search": false,
|
8 |
+
"is_local_process_zero": true,
|
9 |
+
"is_world_process_zero": true,
|
10 |
+
"log_history": [
|
11 |
+
{
|
12 |
+
"epoch": 14.705882352941176,
|
13 |
+
"grad_norm": 0.8522269129753113,
|
14 |
+
"learning_rate": 0.0009264705882352942,
|
15 |
+
"loss": 1.7538,
|
16 |
+
"step": 500
|
17 |
+
},
|
18 |
+
{
|
19 |
+
"epoch": 29.41176470588235,
|
20 |
+
"grad_norm": 0.24410583078861237,
|
21 |
+
"learning_rate": 0.0008529411764705882,
|
22 |
+
"loss": 0.0574,
|
23 |
+
"step": 1000
|
24 |
+
},
|
25 |
+
{
|
26 |
+
"epoch": 44.11764705882353,
|
27 |
+
"grad_norm": 0.32126477360725403,
|
28 |
+
"learning_rate": 0.0007794117647058824,
|
29 |
+
"loss": 0.0246,
|
30 |
+
"step": 1500
|
31 |
+
},
|
32 |
+
{
|
33 |
+
"epoch": 58.8235294117647,
|
34 |
+
"grad_norm": 0.1633734405040741,
|
35 |
+
"learning_rate": 0.0007058823529411765,
|
36 |
+
"loss": 0.0177,
|
37 |
+
"step": 2000
|
38 |
+
},
|
39 |
+
{
|
40 |
+
"epoch": 73.52941176470588,
|
41 |
+
"grad_norm": 1.6365108489990234,
|
42 |
+
"learning_rate": 0.0006323529411764706,
|
43 |
+
"loss": 0.0407,
|
44 |
+
"step": 2500
|
45 |
+
},
|
46 |
+
{
|
47 |
+
"epoch": 88.23529411764706,
|
48 |
+
"grad_norm": 0.11134446412324905,
|
49 |
+
"learning_rate": 0.0005588235294117647,
|
50 |
+
"loss": 0.0197,
|
51 |
+
"step": 3000
|
52 |
+
},
|
53 |
+
{
|
54 |
+
"epoch": 102.94117647058823,
|
55 |
+
"grad_norm": 1.3109087944030762,
|
56 |
+
"learning_rate": 0.0004852941176470588,
|
57 |
+
"loss": 0.0146,
|
58 |
+
"step": 3500
|
59 |
+
},
|
60 |
+
{
|
61 |
+
"epoch": 117.6470588235294,
|
62 |
+
"grad_norm": 0.1169649288058281,
|
63 |
+
"learning_rate": 0.0004117647058823529,
|
64 |
+
"loss": 0.0043,
|
65 |
+
"step": 4000
|
66 |
+
},
|
67 |
+
{
|
68 |
+
"epoch": 132.35294117647058,
|
69 |
+
"grad_norm": 0.061263132840394974,
|
70 |
+
"learning_rate": 0.0003382352941176471,
|
71 |
+
"loss": 0.0044,
|
72 |
+
"step": 4500
|
73 |
+
},
|
74 |
+
{
|
75 |
+
"epoch": 147.05882352941177,
|
76 |
+
"grad_norm": 0.019590700045228004,
|
77 |
+
"learning_rate": 0.0002647058823529412,
|
78 |
+
"loss": 0.0025,
|
79 |
+
"step": 5000
|
80 |
+
},
|
81 |
+
{
|
82 |
+
"epoch": 161.76470588235293,
|
83 |
+
"grad_norm": 0.011288847774267197,
|
84 |
+
"learning_rate": 0.00019117647058823528,
|
85 |
+
"loss": 0.0024,
|
86 |
+
"step": 5500
|
87 |
+
},
|
88 |
+
{
|
89 |
+
"epoch": 176.47058823529412,
|
90 |
+
"grad_norm": 0.011768895201385021,
|
91 |
+
"learning_rate": 0.00011764705882352942,
|
92 |
+
"loss": 0.0017,
|
93 |
+
"step": 6000
|
94 |
+
},
|
95 |
+
{
|
96 |
+
"epoch": 191.1764705882353,
|
97 |
+
"grad_norm": 0.010613554157316685,
|
98 |
+
"learning_rate": 4.411764705882353e-05,
|
99 |
+
"loss": 0.0015,
|
100 |
+
"step": 6500
|
101 |
+
},
|
102 |
+
{
|
103 |
+
"epoch": 200.0,
|
104 |
+
"step": 6800,
|
105 |
+
"total_flos": 1.175134666752e+17,
|
106 |
+
"train_loss": 0.14310694140546462,
|
107 |
+
"train_runtime": 11074.5138,
|
108 |
+
"train_samples_per_second": 2.438,
|
109 |
+
"train_steps_per_second": 0.614
|
110 |
+
}
|
111 |
+
],
|
112 |
+
"logging_steps": 500,
|
113 |
+
"max_steps": 6800,
|
114 |
+
"num_input_tokens_seen": 0,
|
115 |
+
"num_train_epochs": 200,
|
116 |
+
"save_steps": 500,
|
117 |
+
"stateful_callbacks": {
|
118 |
+
"TrainerControl": {
|
119 |
+
"args": {
|
120 |
+
"should_epoch_stop": false,
|
121 |
+
"should_evaluate": false,
|
122 |
+
"should_log": false,
|
123 |
+
"should_save": true,
|
124 |
+
"should_training_stop": false
|
125 |
+
},
|
126 |
+
"attributes": {}
|
127 |
+
}
|
128 |
+
},
|
129 |
+
"total_flos": 1.175134666752e+17,
|
130 |
+
"train_batch_size": 4,
|
131 |
+
"trial_name": null,
|
132 |
+
"trial_params": null
|
133 |
+
}
|
training_args.bin
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:431a1bfed34c87857239222334d4e4599fd4c55d91edf03879fa59d9ee1f3a8f
|
3 |
+
size 5112
|
vocab.json
ADDED
The diff for this file is too large to render.
See raw diff
|
|