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tabula_sapiens_Ovary

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.3
python_version:3.11.11
tissue: Ovary
Model card Files Community
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@@ -32,28 +32,28 @@ computed on a 10% random subset of the data that was not used for training.
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  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
- | stromal cell of ovary | 3484 | 0.99 | 0.97 | 0.96 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |
36
- | blood vessel smooth muscle cell | 660 | 0.97 | 0.92 | 0.95 | 0.96 | 0.00 | 0.95 | 0.95 | 0.93 | 0.97 |
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- | stromal cell | 221 | 0.96 | 0.72 | 0.52 | 0.90 | 0.00 | 0.86 | 0.88 | 0.95 | 0.96 |
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- | endothelial cell | 169 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |
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- | smooth muscle cell | 107 | 0.94 | 0.59 | 0.71 | 0.92 | 0.00 | 0.86 | 0.94 | 0.94 | 0.96 |
40
- | theca cell | 123 | 0.82 | 0.72 | 0.90 | 0.83 | 0.00 | 0.67 | 0.74 | 0.73 | 0.86 |
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- | macrophage | 56 | 0.93 | 0.95 | 0.95 | 0.91 | 0.00 | 0.93 | 0.92 | 0.95 | 0.95 |
42
- | ovarian surface epithelial cell | 20 | 0.98 | 0.95 | 0.97 | 0.79 | 0.00 | 0.51 | 0.91 | 0.91 | 0.98 |
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- | glandular epithelial cell | 27 | 0.98 | 0.90 | 0.98 | 0.82 | 0.00 | 0.93 | 0.98 | 0.95 | 1.00 |
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- | CD8-positive, alpha-beta T cell | 8 | 0.57 | 0.74 | 0.63 | 0.67 | 0.00 | 0.78 | 0.80 | 0.80 | 0.70 |
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- | leukocyte | 4 | 0.00 | 0.00 | 0.57 | 0.40 | 0.00 | 0.86 | 0.86 | 0.67 | 0.40 |
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- | CD4-positive, alpha-beta T cell | 5 | 0.00 | 0.50 | 0.25 | 0.00 | 0.00 | 0.40 | 0.00 | 0.33 | 0.29 |
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- | glial cell | 1 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 0.67 | 0.67 | 0.67 |
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- | oocyte | 3 | 1.00 | 1.00 | 1.00 | 0.86 | 0.00 | 0.86 | 1.00 | 1.00 | 1.00 |
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- | neutrophil | 2 | 0.00 | 1.00 | 1.00 | 0.67 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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- | plasma cell | 4 | 0.00 | 0.00 | 0.86 | 0.40 | 0.00 | 0.57 | 0.40 | 0.86 | 0.67 |
51
- | epithelial cell | 1 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
52
  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
53
  | monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
54
  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
55
  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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- | mast cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 1.00 | 0.00 |
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  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
58
  | T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
@@ -63,32 +63,32 @@ The train accuracies are computed on the training data.
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64
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
65
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
66
- | stromal cell of ovary | 31519 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |
67
- | blood vessel smooth muscle cell | 5982 | 0.97 | 0.89 | 0.97 | 0.97 | 0.00 | 0.96 | 0.95 | 0.93 | 0.98 |
68
- | stromal cell | 1938 | 0.95 | 0.73 | 0.73 | 0.93 | 0.00 | 0.94 | 0.90 | 0.94 | 0.98 |
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- | endothelial cell | 1555 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 1.00 |
70
- | smooth muscle cell | 1164 | 0.96 | 0.56 | 0.85 | 0.93 | 0.00 | 0.93 | 0.96 | 0.96 | 0.98 |
71
- | theca cell | 915 | 0.76 | 0.59 | 0.94 | 0.86 | 0.00 | 0.68 | 0.72 | 0.68 | 0.84 |
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- | macrophage | 348 | 0.89 | 0.93 | 0.96 | 0.90 | 0.00 | 0.95 | 0.98 | 0.98 | 0.98 |
73
- | ovarian surface epithelial cell | 221 | 0.96 | 0.95 | 0.98 | 0.89 | 0.00 | 0.57 | 0.92 | 0.91 | 1.00 |
74
- | glandular epithelial cell | 208 | 0.95 | 0.86 | 0.99 | 0.86 | 0.00 | 0.90 | 0.98 | 0.96 | 0.99 |
75
- | CD8-positive, alpha-beta T cell | 65 | 0.63 | 0.76 | 0.84 | 0.76 | 0.00 | 0.98 | 1.00 | 1.00 | 0.93 |
76
- | leukocyte | 23 | 0.00 | 0.30 | 0.77 | 0.73 | 0.00 | 0.96 | 1.00 | 1.00 | 0.95 |
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- | CD4-positive, alpha-beta T cell | 18 | 0.00 | 0.09 | 0.39 | 0.46 | 0.00 | 0.84 | 1.00 | 1.00 | 0.80 |
78
- | glial cell | 19 | 0.76 | 0.10 | 0.79 | 0.61 | 0.00 | 0.17 | 0.90 | 0.83 | 0.84 |
79
- | oocyte | 15 | 0.88 | 0.87 | 0.87 | 0.90 | 0.00 | 0.86 | 0.81 | 0.86 | 0.88 |
80
- | neutrophil | 15 | 0.00 | 0.97 | 1.00 | 0.42 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
81
- | plasma cell | 10 | 0.00 | 0.57 | 0.82 | 0.40 | 0.00 | 0.72 | 0.95 | 0.83 | 0.95 |
82
- | epithelial cell | 8 | 0.00 | 0.00 | 0.80 | 0.86 | 0.00 | 0.70 | 1.00 | 1.00 | 1.00 |
83
- | plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.60 | 0.67 | 0.00 | 0.62 | 1.00 | 1.00 | 1.00 |
84
- | monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.00 |
85
- | B cell | 3 | 0.00 | 0.00 | 0.80 | 0.00 | 0.00 | 0.46 | 1.00 | 1.00 | 1.00 |
86
- | classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.21 | 1.00 | 1.00 | 0.50 |
87
- | mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 1.00 | 1.00 | 1.00 |
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- | mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.67 |
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- | T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.15 | 1.00 | 1.00 | 1.00 |
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- | myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.00 |
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- | hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
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93
  </details>
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33
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
34
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
35
+ | stromal cell of ovary | 3480 | 0.98 | 0.97 | 0.96 | 0.99 | 0.00 | 0.96 | 0.97 | 0.97 | 0.99 |
36
+ | blood vessel smooth muscle cell | 658 | 0.97 | 0.92 | 0.94 | 0.95 | 0.00 | 0.96 | 0.94 | 0.91 | 0.97 |
37
+ | stromal cell | 226 | 0.96 | 0.75 | 0.48 | 0.92 | 0.00 | 0.91 | 0.88 | 0.90 | 0.97 |
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+ | endothelial cell | 174 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
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+ | smooth muscle cell | 104 | 0.96 | 0.58 | 0.69 | 0.89 | 0.00 | 0.95 | 0.94 | 0.92 | 0.96 |
40
+ | theca cell | 121 | 0.78 | 0.75 | 0.88 | 0.81 | 0.00 | 0.66 | 0.75 | 0.72 | 0.86 |
41
+ | macrophage | 60 | 0.95 | 0.96 | 0.95 | 0.88 | 0.00 | 0.93 | 0.93 | 0.96 | 0.97 |
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+ | ovarian surface epithelial cell | 19 | 0.95 | 0.89 | 0.94 | 0.74 | 0.00 | 0.54 | 0.86 | 0.95 | 0.95 |
43
+ | glandular epithelial cell | 28 | 0.98 | 0.94 | 0.98 | 0.81 | 0.00 | 0.90 | 0.97 | 0.97 | 0.98 |
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+ | CD8-positive, alpha-beta T cell | 8 | 0.67 | 0.70 | 0.63 | 0.50 | 0.00 | 0.76 | 0.89 | 0.94 | 0.84 |
45
+ | leukocyte | 4 | 0.00 | 0.00 | 0.29 | 0.40 | 0.00 | 0.75 | 0.67 | 0.86 | 0.67 |
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+ | CD4-positive, alpha-beta T cell | 4 | 0.00 | 0.33 | 0.29 | 0.00 | 0.00 | 0.00 | 0.67 | 0.86 | 0.40 |
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+ | glial cell | 1 | 0.67 | 1.00 | 0.67 | 0.00 | 0.00 | 0.02 | 0.67 | 0.67 | 0.67 |
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+ | oocyte | 3 | 0.75 | 1.00 | 1.00 | 0.86 | 0.00 | 1.00 | 0.86 | 1.00 | 1.00 |
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+ | neutrophil | 2 | 1.00 | 1.00 | 1.00 | 0.50 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
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+ | plasma cell | 3 | 0.67 | 0.00 | 0.80 | 1.00 | 0.00 | 1.00 | 1.00 | 0.80 | 1.00 |
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+ | epithelial cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
52
  | plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
53
  | monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
55
  | classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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+ | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | mature NK T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
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  | myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
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64
  | Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |
65
  | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
66
+ | stromal cell of ovary | 31523 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.97 | 0.97 | 0.99 |
67
+ | blood vessel smooth muscle cell | 5984 | 0.97 | 0.89 | 0.97 | 0.96 | 0.00 | 0.97 | 0.95 | 0.92 | 0.98 |
68
+ | stromal cell | 1933 | 0.96 | 0.72 | 0.72 | 0.93 | 0.00 | 0.95 | 0.90 | 0.93 | 0.98 |
69
+ | endothelial cell | 1550 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
70
+ | smooth muscle cell | 1167 | 0.97 | 0.55 | 0.84 | 0.92 | 0.00 | 0.95 | 0.96 | 0.97 | 0.98 |
71
+ | theca cell | 917 | 0.73 | 0.62 | 0.94 | 0.84 | 0.00 | 0.64 | 0.72 | 0.71 | 0.84 |
72
+ | macrophage | 344 | 0.90 | 0.93 | 0.96 | 0.92 | 0.00 | 0.97 | 0.96 | 0.98 | 0.98 |
73
+ | ovarian surface epithelial cell | 222 | 0.97 | 0.95 | 0.97 | 0.92 | 0.00 | 0.67 | 0.90 | 0.96 | 1.00 |
74
+ | glandular epithelial cell | 207 | 0.95 | 0.84 | 0.99 | 0.90 | 0.00 | 0.93 | 0.98 | 0.92 | 0.99 |
75
+ | CD8-positive, alpha-beta T cell | 65 | 0.67 | 0.76 | 0.81 | 0.83 | 0.00 | 0.96 | 1.00 | 1.00 | 0.92 |
76
+ | leukocyte | 23 | 0.00 | 0.30 | 0.62 | 0.75 | 0.00 | 1.00 | 1.00 | 1.00 | 0.98 |
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+ | CD4-positive, alpha-beta T cell | 19 | 0.00 | 0.00 | 0.45 | 0.46 | 0.00 | 0.95 | 1.00 | 1.00 | 0.73 |
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+ | glial cell | 19 | 0.76 | 0.00 | 0.77 | 0.57 | 0.00 | 0.06 | 0.90 | 0.84 | 0.84 |
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+ | oocyte | 15 | 0.62 | 0.87 | 0.85 | 0.90 | 0.00 | 0.71 | 0.83 | 0.86 | 0.83 |
80
+ | neutrophil | 15 | 0.81 | 0.94 | 0.97 | 0.64 | 0.00 | 0.81 | 1.00 | 1.00 | 1.00 |
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+ | plasma cell | 11 | 0.61 | 0.53 | 0.90 | 0.80 | 0.00 | 0.83 | 0.96 | 0.81 | 0.92 |
82
+ | epithelial cell | 8 | 0.00 | 0.00 | 0.74 | 0.57 | 0.00 | 0.73 | 1.00 | 0.94 | 1.00 |
83
+ | plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.44 | 0.83 | 0.00 | 0.56 | 1.00 | 1.00 | 0.91 |
84
+ | monocyte | 4 | 0.00 | 0.00 | 0.00 | 0.29 | 0.00 | 0.89 | 1.00 | 1.00 | 0.40 |
85
+ | B cell | 3 | 0.00 | 0.00 | 0.50 | 0.80 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
86
+ | classical monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.86 | 1.00 | 1.00 | 0.50 |
87
+ | mast cell | 3 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
88
+ | mature NK T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.67 |
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+ | T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |
90
+ | myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.00 |
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+ | hematopoietic precursor cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.03 | 1.00 | 1.00 | 1.00 |
92
 
93
  </details>
94