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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 5482 | 0.99 | 0.99 | 0.99 | 1.00 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 3919 | 0.76 | 0.86 | 0.86 | 0.85 | 0.00 | 0.70 | 0.63 | 0.77 | 0.87 |\n| CD8-positive, alpha-beta T cell | 1472 | 0.79 | 0.81 | 0.80 | 0.74 | 0.00 | 0.79 | 0.77 | 0.84 | 0.83 |\n| plasma cell | 608 | 0.98 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.97 | 0.98 | 0.99 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 404 | 0.19 | 0.02 | 0.08 | 0.07 | 0.00 | 0.28 | 0.41 | 0.52 | 0.28 |\n| macrophage | 166 | 0.92 | 0.93 | 0.91 | 0.89 | 0.00 | 0.86 | 0.84 | 0.91 | 0.92 |\n| natural killer cell | 175 | 0.57 | 0.64 | 0.64 | 0.60 | 0.00 | 0.65 | 0.55 | 0.64 | 0.65 |\n| T cell | 123 | 0.69 | 0.72 | 0.65 | 0.58 | 0.00 | 0.43 | 0.45 | 0.64 | 0.69 |\n| mature NK T cell | 120 | 0.49 | 0.43 | 0.46 | 0.48 | 0.00 | 0.41 | 0.45 | 0.55 | 0.54 |\n| regulatory T cell | 92 | 0.17 | 0.02 | 0.09 | 0.06 | 0.00 | 0.22 | 0.18 | 0.22 | 0.31 |\n| monocyte | 68 | 0.76 | 0.76 | 0.77 | 0.75 | 0.00 | 0.67 | 0.75 | 0.80 | 0.85 |\n| innate lymphoid cell | 86 | 0.54 | 0.52 | 0.41 | 0.29 | 0.00 | 0.54 | 0.43 | 0.64 | 0.69 |\n| classical monocyte | 52 | 0.68 | 0.76 | 0.67 | 0.59 | 0.00 | 0.65 | 0.74 | 0.79 | 0.78 |\n| neutrophil | 24 | 0.87 | 0.92 | 0.96 | 0.96 | 0.00 | 0.87 | 0.96 | 0.94 | 0.94 |\n| intermediate monocyte | 22 | 0.00 | 0.46 | 0.36 | 0.35 | 0.00 | 0.42 | 0.69 | 0.78 | 0.60 |\n| mast cell | 19 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.95 | 0.97 | 1.00 | 1.00 |\n| endothelial cell | 24 | 0.72 | 0.71 | 0.74 | 0.68 | 0.00 | 0.69 | 0.81 | 0.86 | 0.82 |\n| myeloid dendritic cell | 13 | 0.67 | 0.67 | 0.43 | 0.45 | 0.00 | 0.33 | 0.61 | 0.71 | 0.67 |\n| CD4-positive, alpha-beta thymocyte | 9 | 0.00 | 0.00 | 0.00 | 0.27 | 0.00 | 0.27 | 0.15 | 0.35 | 0.36 |\n| stromal cell | 13 | 0.81 | 0.53 | 0.77 | 0.74 | 0.00 | 0.84 | 0.96 | 0.88 | 0.93 |\n| non-classical monocyte | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.27 | 0.00 | 0.43 | 0.00 |\n| CD8-positive, alpha-beta thymocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.21 | 0.24 | 0.17 | 0.00 |\n| erythrocyte | 2 | 0.33 | 0.40 | 0.22 | 1.00 | 0.00 | 0.24 | 1.00 | 1.00 | 0.80 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.04 | 0.00 | 0.00 | 0.00 |\n| hematopoietic precursor cell | 3 | 0.00 | 0.00 | 0.00 | 0.33 | 0.00 | 0.10 | 0.00 | 0.00 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 49264 | 0.99 | 0.98 | 1.00 | 1.00 | 0.00 | 0.97 | 0.99 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 35361 | 0.76 | 0.86 | 0.89 | 0.88 | 0.00 | 0.73 | 0.63 | 0.78 | 0.88 |\n| CD8-positive, alpha-beta T cell | 13210 | 0.79 | 0.82 | 0.85 | 0.81 | 0.00 | 0.80 | 0.78 | 0.86 | 0.85 |\n| plasma cell | 5336 | 0.98 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 0.98 | 0.99 | 0.99 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 3750 | 0.20 | 0.01 | 0.20 | 0.14 | 0.00 | 0.32 | 0.42 | 0.55 | 0.33 |\n| macrophage | 1628 | 0.90 | 0.91 | 0.92 | 0.92 | 0.00 | 0.91 | 0.91 | 0.94 | 0.94 |\n| natural killer cell | 1404 | 0.57 | 0.67 | 0.76 | 0.74 | 0.00 | 0.72 | 0.64 | 0.73 | 0.81 |\n| T cell | 1158 | 0.69 | 0.68 | 0.73 | 0.71 | 0.00 | 0.44 | 0.48 | 0.67 | 0.71 |\n| mature NK T cell | 904 | 0.48 | 0.41 | 0.63 | 0.59 | 0.00 | 0.54 | 0.56 | 0.70 | 0.74 |\n| regulatory T cell | 876 | 0.18 | 0.02 | 0.32 | 0.22 | 0.00 | 0.27 | 0.22 | 0.25 | 0.38 |\n| monocyte | 698 | 0.77 | 0.79 | 0.82 | 0.86 | 0.00 | 0.77 | 0.84 | 0.90 | 0.94 |\n| innate lymphoid cell | 659 | 0.46 | 0.53 | 0.54 | 0.52 | 0.00 | 0.70 | 0.49 | 0.67 | 0.75 |\n| classical monocyte | 500 | 0.63 | 0.67 | 0.74 | 0.69 | 0.00 | 0.81 | 0.89 | 0.92 | 0.87 |\n| neutrophil | 279 | 0.86 | 0.93 | 0.98 | 0.96 | 0.00 | 0.88 | 0.99 | 0.97 | 0.95 |\n| intermediate monocyte | 259 | 0.00 | 0.49 | 0.63 | 0.54 | 0.00 | 0.77 | 0.89 | 0.94 | 0.85 |\n| mast cell | 193 | 0.96 | 0.97 | 0.97 | 0.97 | 0.00 | 0.90 | 0.98 | 0.98 | 0.97 |\n| endothelial cell | 172 | 0.68 | 0.67 | 0.78 | 0.77 | 0.00 | 0.74 | 0.94 | 0.96 | 0.90 |\n| myeloid dendritic cell | 109 | 0.49 | 0.51 | 0.62 | 0.48 | 0.00 | 0.31 | 0.89 | 0.88 | 0.88 |\n| CD4-positive, alpha-beta thymocyte | 113 | 0.00 | 0.00 | 0.02 | 0.28 | 0.00 | 0.45 | 0.45 | 0.74 | 0.66 |\n| stromal cell | 98 | 0.85 | 0.42 | 0.83 | 0.88 | 0.00 | 0.81 | 0.98 | 0.98 | 0.98 |\n| non-classical monocyte | 64 | 0.00 | 0.00 | 0.19 | 0.14 | 0.00 | 0.42 | 0.76 | 0.93 | 0.60 |\n| CD8-positive, alpha-beta thymocyte | 56 | 0.00 | 0.00 | 0.16 | 0.19 | 0.00 | 0.43 | 0.49 | 0.67 | 0.59 |\n| erythrocyte | 40 | 0.68 | 0.83 | 0.62 | 0.88 | 0.00 | 0.30 | 0.98 | 0.90 | 0.94 |\n| plasmacytoid dendritic cell | 15 | 0.00 | 0.64 | 0.81 | 0.54 | 0.00 | 0.06 | 1.00 | 1.00 | 1.00 |\n| hematopoietic precursor cell | 9 | 0.00 | 0.00 | 0.63 | 0.53 | 0.00 | 0.13 | 1.00 | 1.00 | 0.94 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 5434 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 3941 | 0.75 | 0.87 | 0.87 | 0.86 | 0.00 | 0.50 | 0.62 | 0.79 | 0.86 |\n| CD8-positive, alpha-beta T cell | 1464 | 0.77 | 0.81 | 0.81 | 0.78 | 0.00 | 0.79 | 0.77 | 0.85 | 0.83 |\n| plasma cell | 596 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 436 | 0.22 | 0.03 | 0.06 | 0.04 | 0.00 | 0.25 | 0.38 | 0.55 | 0.31 |\n| macrophage | 171 | 0.90 | 0.93 | 0.91 | 0.91 | 0.00 | 0.90 | 0.86 | 0.91 | 0.93 |\n| natural killer cell | 177 | 0.63 | 0.73 | 0.70 | 0.65 | 0.00 | 0.68 | 0.58 | 0.66 | 0.70 |\n| T cell | 127 | 0.62 | 0.80 | 0.73 | 0.72 | 0.00 | 0.55 | 0.51 | 0.67 | 0.70 |\n| mature NK T cell | 115 | 0.55 | 0.44 | 0.50 | 0.43 | 0.00 | 0.36 | 0.44 | 0.53 | 0.53 |\n| regulatory T cell | 102 | 0.23 | 0.02 | 0.21 | 0.15 | 0.00 | 0.19 | 0.20 | 0.25 | 0.36 |\n| monocyte | 73 | 0.78 | 0.81 | 0.78 | 0.79 | 0.00 | 0.71 | 0.84 | 0.81 | 0.84 |\n| innate lymphoid cell | 81 | 0.61 | 0.63 | 0.51 | 0.44 | 0.00 | 0.46 | 0.46 | 0.57 | 0.61 |\n| classical monocyte | 52 | 0.60 | 0.73 | 0.65 | 0.64 | 0.00 | 0.67 | 0.75 | 0.87 | 0.83 |\n| neutrophil | 28 | 0.90 | 0.96 | 0.96 | 0.95 | 0.00 | 0.93 | 0.96 | 0.91 | 0.95 |\n| intermediate monocyte | 24 | 0.00 | 0.51 | 0.53 | 0.52 | 0.00 | 0.65 | 0.69 | 0.83 | 0.85 |\n| mast cell | 15 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 21 | 0.67 | 0.68 | 0.62 | 0.62 | 0.00 | 0.62 | 0.76 | 0.72 | 0.77 |\n| myeloid dendritic cell | 14 | 0.62 | 0.67 | 0.43 | 0.52 | 0.00 | 0.54 | 0.80 | 0.65 | 0.76 |\n| CD4-positive, alpha-beta thymocyte | 10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.17 | 0.10 | 0.17 | 0.00 |\n| stromal cell | 11 | 0.82 | 0.80 | 0.85 | 0.83 | 0.00 | 0.87 | 0.92 | 0.87 | 0.92 |\n| non-classical monocyte | 4 | 0.15 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 0.27 | 0.50 | 0.40 |\n| CD8-positive, alpha-beta thymocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.16 | 0.33 | 0.20 | 0.00 |\n| erythrocyte | 2 | 0.80 | 0.80 | 0.50 | 1.00 | 0.00 | 0.36 | 1.00 | 0.80 | 1.00 |\n| plasmacytoid dendritic cell | 2 | 0.00 | 0.00 | 0.67 | 0.50 | 0.00 | 0.18 | 0.67 | 0.00 | 0.67 |\n| hematopoietic precursor cell | 4 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.25 | 0.40 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 49312 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 35339 | 0.75 | 0.88 | 0.89 | 0.88 | 0.00 | 0.49 | 0.64 | 0.79 | 0.88 |\n| CD8-positive, alpha-beta T cell | 13218 | 0.78 | 0.82 | 0.86 | 0.82 | 0.00 | 0.80 | 0.78 | 0.86 | 0.85 |\n| plasma cell | 5348 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| naive thymus-derived CD4-positive, alpha-beta T cell | 3718 | 0.20 | 0.02 | 0.20 | 0.16 | 0.00 | 0.24 | 0.39 | 0.55 | 0.37 |\n| macrophage | 1623 | 0.90 | 0.92 | 0.93 | 0.93 | 0.00 | 0.91 | 0.92 | 0.95 | 0.95 |\n| natural killer cell | 1402 | 0.62 | 0.73 | 0.80 | 0.78 | 0.00 | 0.76 | 0.70 | 0.76 | 0.83 |\n| T cell | 1154 | 0.60 | 0.73 | 0.78 | 0.74 | 0.00 | 0.58 | 0.52 | 0.69 | 0.70 |\n| mature NK T cell | 909 | 0.54 | 0.47 | 0.64 | 0.65 | 0.00 | 0.60 | 0.63 | 0.69 | 0.75 |\n| regulatory T cell | 866 | 0.21 | 0.02 | 0.40 | 0.29 | 0.00 | 0.20 | 0.22 | 0.27 | 0.39 |\n| monocyte | 693 | 0.80 | 0.79 | 0.85 | 0.88 | 0.00 | 0.85 | 0.87 | 0.92 | 0.94 |\n| innate lymphoid cell | 664 | 0.57 | 0.64 | 0.61 | 0.54 | 0.00 | 0.74 | 0.54 | 0.63 | 0.74 |\n| classical monocyte | 500 | 0.60 | 0.67 | 0.72 | 0.74 | 0.00 | 0.78 | 0.90 | 0.93 | 0.88 |\n| neutrophil | 275 | 0.85 | 0.96 | 0.97 | 1.00 | 0.00 | 0.98 | 0.99 | 0.97 | 0.97 |\n| intermediate monocyte | 257 | 0.00 | 0.52 | 0.61 | 0.60 | 0.00 | 0.78 | 0.88 | 0.92 | 0.89 |\n| mast cell | 197 | 0.97 | 0.97 | 0.97 | 0.97 | 0.00 | 0.96 | 0.98 | 0.98 | 0.97 |\n| endothelial cell | 175 | 0.68 | 0.61 | 0.78 | 0.80 | 0.00 | 0.79 | 0.94 | 0.95 | 0.89 |\n| myeloid dendritic cell | 108 | 0.50 | 0.56 | 0.61 | 0.63 | 0.00 | 0.41 | 0.92 | 0.86 | 0.85 |\n| CD4-positive, alpha-beta thymocyte | 112 | 0.00 | 0.00 | 0.07 | 0.21 | 0.00 | 0.45 | 0.51 | 0.68 | 0.59 |\n| stromal cell | 100 | 0.84 | 0.46 | 0.84 | 0.92 | 0.00 | 0.89 | 0.99 | 0.97 | 0.95 |\n| non-classical monocyte | 67 | 0.26 | 0.16 | 0.27 | 0.17 | 0.00 | 0.33 | 0.76 | 0.77 | 0.68 |\n| CD8-positive, alpha-beta thymocyte | 56 | 0.00 | 0.00 | 0.03 | 0.18 | 0.00 | 0.39 | 0.77 | 0.68 | 0.63 |\n| erythrocyte | 40 | 0.70 | 0.74 | 0.65 | 0.84 | 0.00 | 0.39 | 0.96 | 0.92 | 0.90 |\n| plasmacytoid dendritic cell | 14 | 0.00 | 0.60 | 0.83 | 0.75 | 0.00 | 0.16 | 0.97 | 0.97 | 1.00 |\n| hematopoietic precursor cell | 8 | 0.00 | 0.00 | 0.62 | 0.29 | 0.00 | 0.36 | 1.00 | 1.00 | 0.86 |"
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