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popV
/
tabula_sapiens_Germline

Joblib
popV
biology
genomics
single-cell
anndata_version:0.11.1
tissue: Testis
tissue: Ovary
Model card Files Community
canergen commited on
Commit
a0df36d
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1 Parent(s): e0e5ca8

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Files changed (19) hide show
  1. .gitattributes +2 -0
  2. OnClass.data-00000-of-00001 +3 -0
  3. OnClass.index +0 -0
  4. OnClass.meta +0 -0
  5. OnClass.npz +3 -0
  6. accuracies.json +4 -0
  7. celltypist.pkl +3 -0
  8. checkpoint +2 -0
  9. faiss_index.faiss +3 -0
  10. harmony_knn_classifier.joblib +3 -0
  11. obo_dag.joblib +3 -0
  12. popv_output/predictions.csv +0 -0
  13. preprocessing.json +0 -0
  14. scanvi/model.pt +3 -0
  15. scvi/model.pt +3 -0
  16. scvi_knn_classifier.joblib +3 -0
  17. svm_classifier.joblib +3 -0
  18. svm_classifier_cuml.joblib +3 -0
  19. xgboost_classifier.model +3 -0
.gitattributes CHANGED
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+ OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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OnClass.index ADDED
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 404 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.99 |\n| spermatocyte | 301 | 0.97 | 0.97 | 0.98 | 0.97 | 0.00 | 0.96 | 0.98 | 0.97 | 0.98 |\n| male germ cell | 13 | 0.96 | 0.96 | 0.96 | 0.93 | 0.00 | 0.93 | 1.00 | 0.92 | 0.96 |\n| spermatogonium | 9 | 0.89 | 0.71 | 0.75 | 0.82 | 0.00 | 0.82 | 0.95 | 0.67 | 0.89 |\n| oocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3605 | 0.98 | 0.00 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2769 | 0.97 | 0.00 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| male germ cell | 103 | 0.96 | 0.00 | 0.98 | 0.97 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| spermatogonium | 55 | 0.85 | 0.00 | 0.95 | 0.90 | 0.00 | 0.77 | 0.94 | 0.94 | 0.93 |\n| oocyte | 11 | 0.92 | 0.00 | 1.00 | 0.92 | 0.00 | 0.65 | 1.00 | 1.00 | 1.00 |"
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