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Browse files- .gitattributes +1 -0
- OnClass.data-00000-of-00001 +3 -0
- OnClass.index +0 -0
- OnClass.meta +0 -0
- OnClass.npz +3 -0
- accuracies.json +4 -0
- celltypist.pkl +3 -0
- checkpoint +2 -0
- harmony_knn_classifier.joblib +3 -0
- obo_dag.joblib +3 -0
- popv_output/predictions.csv +0 -0
- preprocessing.json +0 -0
- pynndescent_index.joblib +3 -0
- scanvi/model.pt +3 -0
- scvi/model.pt +3 -0
- scvi_knn_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +3 -0
- xgboost_classifier.model +3 -0
.gitattributes
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@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
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OnClass.data-00000-of-00001
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version https://git-lfs.github.com/spec/v1
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oid sha256:40071b8d31eb78b6fae17656e2611c63688e46785420c20a71c740c27eedf181
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size 27239224
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OnClass.index
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Binary file (222 Bytes). View file
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OnClass.meta
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Binary file (76.3 kB). View file
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OnClass.npz
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version https://git-lfs.github.com/spec/v1
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oid sha256:f0f26b506daebd61294bc813f42a93748403a8462960eed58790161ffb82ad17
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size 144112631
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accuracies.json
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{
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"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 3207 | 0.80 | 0.79 | 0.83 | 0.68 | 0.00 | 0.59 | 0.76 | 0.80 | 0.87 |\n| capillary endothelial cell | 1488 | 0.77 | 0.73 | 0.77 | 0.54 | 0.00 | 0.46 | 0.74 | 0.78 | 0.81 |\n| cardiac endothelial cell | 948 | 0.97 | 0.95 | 0.87 | 0.53 | 0.00 | 0.19 | 0.95 | 0.96 | 0.98 |\n| vein endothelial cell | 451 | 0.48 | 0.13 | 0.55 | 0.22 | 0.00 | 0.36 | 0.49 | 0.54 | 0.60 |\n| endothelial cell of artery | 359 | 0.65 | 0.54 | 0.64 | 0.48 | 0.00 | 0.44 | 0.61 | 0.65 | 0.70 |\n| endothelial cell of lymphatic vessel | 254 | 0.70 | 0.65 | 0.68 | 0.59 | 0.00 | 0.54 | 0.66 | 0.70 | 0.71 |\n| retinal blood vessel endothelial cell | 175 | 0.56 | 0.01 | 0.56 | 0.10 | 0.00 | 0.01 | 0.55 | 0.61 | 0.62 |\n| endothelial cell of vascular tree | 72 | 0.43 | 0.05 | 0.41 | 0.37 | 0.00 | 0.54 | 0.47 | 0.65 | 0.70 |\n| colon endothelial cell | 16 | 0.38 | 0.00 | 0.40 | 0.17 | 0.00 | 0.00 | 0.29 | 0.29 | 0.52 |\n| endothelial cell of arteriole | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| endothelial cell of venule | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| endothelial cell | 30184 | 0.79 | 0.74 | 0.90 | 0.75 | 0.00 | 0.81 | 0.75 | 0.79 | 0.91 |\n| capillary endothelial cell | 13789 | 0.77 | 0.63 | 0.86 | 0.66 | 0.00 | 0.77 | 0.74 | 0.78 | 0.85 |\n| cardiac endothelial cell | 9125 | 0.97 | 0.87 | 0.90 | 0.66 | 0.00 | 0.97 | 0.95 | 0.95 | 0.98 |\n| vein endothelial cell | 4216 | 0.48 | 0.07 | 0.73 | 0.38 | 0.00 | 0.54 | 0.52 | 0.54 | 0.68 |\n| endothelial cell of artery | 3106 | 0.63 | 0.40 | 0.81 | 0.59 | 0.00 | 0.50 | 0.62 | 0.67 | 0.73 |\n| endothelial cell of lymphatic vessel | 2159 | 0.68 | 0.61 | 0.84 | 0.69 | 0.00 | 0.71 | 0.68 | 0.70 | 0.78 |\n| retinal blood vessel endothelial cell | 1888 | 0.53 | 0.00 | 0.76 | 0.26 | 0.00 | 0.96 | 0.59 | 0.66 | 0.87 |\n| endothelial cell of vascular tree | 790 | 0.43 | 0.00 | 0.75 | 0.52 | 0.00 | 0.64 | 0.52 | 0.65 | 0.73 |\n| colon endothelial cell | 285 | 0.45 | 0.03 | 0.68 | 0.27 | 0.00 | 0.91 | 0.53 | 0.58 | 0.89 |\n| endothelial cell of arteriole | 106 | 0.00 | 0.00 | 0.58 | 0.00 | 0.00 | 0.37 | 0.48 | 0.78 | 0.96 |\n| endothelial cell of venule | 40 | 0.00 | 0.00 | 0.30 | 0.00 | 0.00 | 0.18 | 0.39 | 0.77 | 0.89 |"
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}
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celltypist.pkl
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version https://git-lfs.github.com/spec/v1
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oid sha256:e22dcd7b54e19d3dee2ad344336d2e639bdaff7e87e978a9f1a6bf91843e9dda
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size 345566
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checkpoint
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model_checkpoint_path: "OnClass"
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all_model_checkpoint_paths: "OnClass"
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harmony_knn_classifier.joblib
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version https://git-lfs.github.com/spec/v1
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oid sha256:684226ffc347a3ec3eb38047979b2ed85e80156eaf2e04ae19d108bedc3b888d
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size 51244311
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obo_dag.joblib
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version https://git-lfs.github.com/spec/v1
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size 321386
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popv_output/predictions.csv
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preprocessing.json
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pynndescent_index.joblib
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version https://git-lfs.github.com/spec/v1
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size 54112429
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scanvi/model.pt
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version https://git-lfs.github.com/spec/v1
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size 12916524
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scvi/model.pt
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version https://git-lfs.github.com/spec/v1
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size 12393149
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scvi_knn_classifier.joblib
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version https://git-lfs.github.com/spec/v1
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size 28481479
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svm_classifier_cuml.joblib
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version https://git-lfs.github.com/spec/v1
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size 189035
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xgboost_classifier.model
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version https://git-lfs.github.com/spec/v1
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size 3705367
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