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@@ -33,3 +33,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+OnClass.data-00000-of-00001 filter=lfs diff=lfs merge=lfs -text
+faiss_index.faiss filter=lfs diff=lfs merge=lfs -text

OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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+{
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 855 | 0.95 | 0.96 | 0.95 | 0.92 | 0.00 | 0.92 | 0.93 | 0.93 | 0.97 |\n| CD4-positive, alpha-beta T cell | 304 | 0.86 | 0.87 | 0.86 | 0.80 | 0.00 | 0.83 | 0.79 | 0.86 | 0.88 |\n| CD8-positive, alpha-beta T cell | 239 | 0.82 | 0.83 | 0.80 | 0.68 | 0.00 | 0.78 | 0.72 | 0.82 | 0.83 |\n| monocyte | 208 | 0.73 | 0.75 | 0.79 | 0.74 | 0.00 | 0.71 | 0.64 | 0.72 | 0.79 |\n| B cell | 193 | 0.97 | 0.99 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| hematopoietic precursor cell | 180 | 0.80 | 0.83 | 0.79 | 0.81 | 0.00 | 0.82 | 0.83 | 0.84 | 0.87 |\n| plasma cell | 154 | 0.98 | 0.97 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| natural killer cell | 102 | 0.93 | 0.93 | 0.91 | 0.82 | 0.00 | 0.87 | 0.92 | 0.91 | 0.94 |\n| erythroid progenitor cell | 108 | 0.73 | 0.79 | 0.77 | 0.76 | 0.00 | 0.75 | 0.79 | 0.86 | 0.86 |\n| hematopoietic stem cell | 81 | 0.78 | 0.83 | 0.84 | 0.84 | 0.00 | 0.91 | 0.86 | 0.89 | 0.87 |\n| granulocyte | 74 | 0.69 | 0.40 | 0.57 | 0.41 | 0.00 | 0.50 | 0.63 | 0.61 | 0.80 |\n| erythrocyte | 45 | 0.61 | 0.62 | 0.68 | 0.67 | 0.00 | 0.59 | 0.78 | 0.82 | 0.77 |\n| common myeloid progenitor | 45 | 0.76 | 0.72 | 0.71 | 0.57 | 0.00 | 0.67 | 0.74 | 0.81 | 0.76 |\n| macrophage | 31 | 0.59 | 0.39 | 0.52 | 0.42 | 0.00 | 0.49 | 0.61 | 0.67 | 0.69 |\n| classical monocyte | 25 | 0.00 | 0.00 | 0.00 | 0.06 | 0.00 | 0.12 | 0.14 | 0.16 | 0.00 |\n| intermediate monocyte | 25 | 0.42 | 0.47 | 0.33 | 0.27 | 0.00 | 0.39 | 0.39 | 0.38 | 0.49 |\n| myeloid dendritic cell | 10 | 0.62 | 0.27 | 0.50 | 0.47 | 0.00 | 0.34 | 0.48 | 0.80 | 0.64 |\n| T cell | 11 | 0.48 | 0.00 | 0.31 | 0.13 | 0.00 | 0.41 | 0.53 | 0.62 | 0.56 |\n| mature NK T cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.36 | 0.20 | 0.22 |\n| non-classical monocyte | 9 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.11 | 0.27 | 0.13 | 0.20 |\n| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| fibroblast | 1 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 4 | 0.00 | 0.00 | 0.40 | 0.40 | 0.00 | 0.80 | 0.00 | 0.40 | 0.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn on bbknn |  knn on harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 7822 | 0.95 | 0.95 | 0.97 | 0.97 | 0.00 | 0.96 | 0.94 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 2869 | 0.84 | 0.85 | 0.87 | 0.85 | 0.00 | 0.83 | 0.85 | 0.87 | 0.88 |\n| CD8-positive, alpha-beta T cell | 2397 | 0.80 | 0.81 | 0.86 | 0.79 | 0.00 | 0.80 | 0.80 | 0.85 | 0.86 |\n| monocyte | 1832 | 0.74 | 0.78 | 0.84 | 0.82 | 0.00 | 0.76 | 0.79 | 0.85 | 0.88 |\n| B cell | 1626 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 1540 | 0.80 | 0.83 | 0.88 | 0.87 | 0.00 | 0.86 | 0.86 | 0.88 | 0.91 |\n| plasma cell | 1294 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |\n| natural killer cell | 997 | 0.92 | 0.91 | 0.94 | 0.87 | 0.00 | 0.89 | 0.94 | 0.95 | 0.97 |\n| erythroid progenitor cell | 863 | 0.71 | 0.74 | 0.78 | 0.84 | 0.00 | 0.86 | 0.90 | 0.94 | 0.94 |\n| hematopoietic stem cell | 711 | 0.78 | 0.82 | 0.87 | 0.87 | 0.00 | 0.88 | 0.93 | 0.94 | 0.92 |\n| granulocyte | 561 | 0.62 | 0.25 | 0.75 | 0.66 | 0.00 | 0.65 | 0.64 | 0.64 | 0.83 |\n| erythrocyte | 408 | 0.65 | 0.67 | 0.78 | 0.83 | 0.00 | 0.91 | 0.94 | 0.95 | 0.92 |\n| common myeloid progenitor | 408 | 0.68 | 0.64 | 0.70 | 0.80 | 0.00 | 0.81 | 0.90 | 0.93 | 0.92 |\n| macrophage | 327 | 0.60 | 0.47 | 0.70 | 0.69 | 0.00 | 0.85 | 0.88 | 0.90 | 0.93 |\n| classical monocyte | 206 | 0.06 | 0.02 | 0.27 | 0.42 | 0.00 | 0.61 | 0.70 | 0.75 | 0.75 |\n| intermediate monocyte | 199 | 0.46 | 0.30 | 0.61 | 0.55 | 0.00 | 0.75 | 0.85 | 0.93 | 0.84 |\n| myeloid dendritic cell | 98 | 0.57 | 0.43 | 0.72 | 0.68 | 0.00 | 0.63 | 0.73 | 0.86 | 0.89 |\n| T cell | 87 | 0.35 | 0.00 | 0.33 | 0.34 | 0.00 | 0.42 | 0.63 | 0.63 | 0.63 |\n| mature NK T cell | 57 | 0.00 | 0.03 | 0.29 | 0.12 | 0.00 | 0.53 | 0.93 | 0.93 | 0.92 |\n| non-classical monocyte | 44 | 0.00 | 0.12 | 0.29 | 0.22 | 0.00 | 0.60 | 0.93 | 0.97 | 0.82 |\n| basophil | 22 | 0.00 | 0.00 | 0.60 | 0.55 | 0.00 | 0.27 | 0.81 | 0.73 | 0.81 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.29 | 0.76 | 0.62 | 0.25 |\n| fibroblast | 10 | 0.00 | 0.29 | 0.60 | 0.64 | 0.00 | 0.29 | 0.91 | 0.91 | 0.91 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.25 | 0.91 | 1.00 | 0.91 |\n| endothelial cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.80 |"
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celltypist.pkl

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checkpoint

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faiss_index.faiss

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scanvi/model.pt

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