| { | |
| "query_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 856 | 0.96 | 0.96 | 0.96 | 0.94 | 0.00 | 0.92 | 0.95 | 0.94 | 0.97 |\n| CD4-positive, alpha-beta T cell | 303 | 0.86 | 0.87 | 0.85 | 0.84 | 0.00 | 0.76 | 0.87 | 0.90 | 0.89 |\n| CD8-positive, alpha-beta T cell | 247 | 0.82 | 0.86 | 0.81 | 0.77 | 0.00 | 0.78 | 0.84 | 0.87 | 0.86 |\n| monocyte | 214 | 0.75 | 0.81 | 0.80 | 0.80 | 0.00 | 0.66 | 0.65 | 0.75 | 0.80 |\n| B cell | 187 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 182 | 0.80 | 0.86 | 0.85 | 0.87 | 0.00 | 0.86 | 0.83 | 0.86 | 0.88 |\n| plasma cell | 149 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 1.00 | 0.99 | 0.99 | 1.00 |\n| natural killer cell | 102 | 0.93 | 0.97 | 0.95 | 0.89 | 0.00 | 0.92 | 0.95 | 0.94 | 0.95 |\n| erythroid progenitor cell | 107 | 0.73 | 0.77 | 0.74 | 0.76 | 0.00 | 0.75 | 0.83 | 0.87 | 0.85 |\n| hematopoietic stem cell | 79 | 0.77 | 0.85 | 0.83 | 0.83 | 0.00 | 0.86 | 0.86 | 0.89 | 0.90 |\n| granulocyte | 74 | 0.73 | 0.37 | 0.64 | 0.45 | 0.00 | 0.49 | 0.65 | 0.65 | 0.75 |\n| erythrocyte | 46 | 0.57 | 0.64 | 0.66 | 0.64 | 0.00 | 0.52 | 0.82 | 0.80 | 0.75 |\n| common myeloid progenitor | 44 | 0.69 | 0.73 | 0.62 | 0.62 | 0.00 | 0.67 | 0.81 | 0.86 | 0.78 |\n| macrophage | 31 | 0.55 | 0.49 | 0.53 | 0.43 | 0.00 | 0.62 | 0.54 | 0.65 | 0.70 |\n| classical monocyte | 25 | 0.10 | 0.00 | 0.16 | 0.11 | 0.00 | 0.20 | 0.18 | 0.20 | 0.11 |\n| intermediate monocyte | 24 | 0.34 | 0.49 | 0.41 | 0.22 | 0.00 | 0.36 | 0.43 | 0.52 | 0.57 |\n| myeloid dendritic cell | 10 | 0.75 | 0.27 | 0.71 | 0.84 | 0.00 | 0.67 | 0.43 | 0.61 | 0.82 |\n| T cell | 11 | 0.62 | 0.00 | 0.29 | 0.00 | 0.00 | 0.49 | 0.61 | 0.67 | 0.64 |\n| mature NK T cell | 6 | 0.00 | 0.80 | 0.44 | 0.00 | 0.00 | 0.56 | 0.33 | 0.22 | 0.25 |\n| non-classical monocyte | 9 | 0.00 | 0.20 | 0.18 | 0.00 | 0.00 | 0.00 | 0.00 | 0.14 | 0.00 |\n| basophil | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 | 0.00 |\n| regulatory T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| fibroblast | 1 | 0.00 | 1.00 | 1.00 | 1.00 | 0.00 | 0.67 | 0.00 | 0.00 | 1.00 |\n| plasmacytoid dendritic cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.57 | 0.00 |\n| endothelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |", | |
| "ref_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| neutrophil | 7821 | 0.97 | 0.96 | 0.98 | 0.98 | 0.00 | 0.97 | 0.96 | 0.95 | 0.98 |\n| CD4-positive, alpha-beta T cell | 2870 | 0.85 | 0.86 | 0.89 | 0.87 | 0.00 | 0.77 | 0.89 | 0.92 | 0.90 |\n| CD8-positive, alpha-beta T cell | 2389 | 0.82 | 0.83 | 0.88 | 0.83 | 0.00 | 0.79 | 0.87 | 0.89 | 0.88 |\n| monocyte | 1826 | 0.78 | 0.81 | 0.87 | 0.86 | 0.00 | 0.74 | 0.82 | 0.87 | 0.89 |\n| B cell | 1632 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| hematopoietic precursor cell | 1538 | 0.80 | 0.84 | 0.91 | 0.91 | 0.00 | 0.89 | 0.87 | 0.90 | 0.92 |\n| plasma cell | 1299 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| natural killer cell | 997 | 0.94 | 0.94 | 0.96 | 0.91 | 0.00 | 0.92 | 0.97 | 0.96 | 0.97 |\n| erythroid progenitor cell | 864 | 0.70 | 0.74 | 0.82 | 0.83 | 0.00 | 0.88 | 0.93 | 0.95 | 0.94 |\n| hematopoietic stem cell | 713 | 0.77 | 0.83 | 0.88 | 0.88 | 0.00 | 0.88 | 0.94 | 0.95 | 0.94 |\n| granulocyte | 561 | 0.70 | 0.24 | 0.79 | 0.68 | 0.00 | 0.69 | 0.70 | 0.68 | 0.85 |\n| erythrocyte | 407 | 0.65 | 0.65 | 0.80 | 0.79 | 0.00 | 0.87 | 0.94 | 0.95 | 0.92 |\n| common myeloid progenitor | 409 | 0.61 | 0.69 | 0.77 | 0.80 | 0.00 | 0.82 | 0.92 | 0.95 | 0.91 |\n| macrophage | 327 | 0.59 | 0.54 | 0.75 | 0.70 | 0.00 | 0.82 | 0.89 | 0.91 | 0.91 |\n| classical monocyte | 206 | 0.21 | 0.01 | 0.38 | 0.38 | 0.00 | 0.53 | 0.70 | 0.78 | 0.75 |\n| intermediate monocyte | 200 | 0.44 | 0.45 | 0.64 | 0.60 | 0.00 | 0.70 | 0.85 | 0.92 | 0.82 |\n| myeloid dendritic cell | 98 | 0.57 | 0.47 | 0.72 | 0.72 | 0.00 | 0.72 | 0.72 | 0.83 | 0.88 |\n| T cell | 87 | 0.46 | 0.14 | 0.53 | 0.47 | 0.00 | 0.47 | 0.71 | 0.71 | 0.76 |\n| mature NK T cell | 58 | 0.00 | 0.44 | 0.56 | 0.34 | 0.00 | 0.64 | 0.91 | 0.94 | 0.95 |\n| non-classical monocyte | 44 | 0.00 | 0.08 | 0.49 | 0.23 | 0.00 | 0.84 | 0.97 | 0.95 | 0.80 |\n| basophil | 22 | 0.00 | 0.00 | 0.67 | 0.69 | 0.00 | 0.45 | 0.86 | 0.83 | 0.81 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.12 | 0.00 | 0.00 | 0.72 | 0.93 | 0.74 | 0.25 |\n| fibroblast | 10 | 0.00 | 0.31 | 0.67 | 0.17 | 0.00 | 0.62 | 0.91 | 0.95 | 0.82 |\n| plasmacytoid dendritic cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.26 | 0.91 | 0.77 | 0.91 |\n| endothelial cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.50 |" | |
| } |