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Duplicate from QuantFactory/Bio-Medical-Llama-3-8B-GGUF
Browse filesCo-authored-by: Aashish Kumar <aashish1904@users.noreply.huggingface.co>
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README.md
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---
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license: other
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library_name: transformers
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tags:
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- generated_from_trainer
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- medical
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- Healthcare & Lifesciences
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- BioMed
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base_model: meta-llama/Meta-Llama-3-8B-Instruct
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thumbnail: https://collaiborate.com/logo/logo-blue-bg-1.png
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model-index:
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- name: Bio-Medical-Llama-3-8B
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results: []
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datasets:
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- collaiborateorg/BioMedData
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---
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[![QuantFactory Banner](https://lh7-rt.googleusercontent.com/docsz/AD_4nXeiuCm7c8lEwEJuRey9kiVZsRn2W-b4pWlu3-X534V3YmVuVc2ZL-NXg2RkzSOOS2JXGHutDuyyNAUtdJI65jGTo8jT9Y99tMi4H4MqL44Uc5QKG77B0d6-JfIkZHFaUA71-RtjyYZWVIhqsNZcx8-OMaA?key=xt3VSDoCbmTY7o-cwwOFwQ)](https://hf.co/QuantFactory)
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# QuantFactory/Bio-Medical-Llama-3-8B-GGUF
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This is quantized version of [ContactDoctor/Bio-Medical-Llama-3-8B](https://huggingface.co/ContactDoctor/Bio-Medical-Llama-3-8B) created using llama.cpp
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# Original Model Card
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# Bio-Medical
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![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/653f5b93cd52f288490edc83/zPMUugzfOiwTiRw88jm7T.jpeg)
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This model is a fine-tuned version of https://huggingface.co/meta-llama/Meta-Llama-3-8B-Instruct on our custom "BioMedData" dataset.
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## Model details
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Model Name: Bio-Medical-Llama-3-8B
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Base Model: Llama-3-8B-Instruct
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Parameter Count: 8 billion
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Training Data: Custom high-quality biomedical dataset
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Number of Entries in Dataset: 500,000+
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Dataset Composition: The dataset comprises both synthetic and manually curated samples, ensuring a diverse and comprehensive coverage of biomedical knowledge.
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## Model description
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Bio-Medical-Llama-3-8B model is a specialized large language model designed for biomedical applications. It is finetuned from the meta-llama/Meta-Llama-3-8B-Instruct model using a custom dataset containing over 500,000 diverse entries. These entries include a mix of synthetic and manually curated data, ensuring high quality and broad coverage of biomedical topics.
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The model is trained to understand and generate text related to various biomedical fields, making it a valuable tool for researchers, clinicians, and other professionals in the biomedical domain.
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## Evaluation Metrics
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Bio-Medical-Llama-3-8B model outperforms many of the leading LLMs and find below its metrics evaluated using the Eleuther AI Language Model Evaluation Harness framework against the tasks medmcqa, medqa_4options, mmlu_anatomy, mmlu_clinical_knowledge, mmlu_college_biology, mmlu_college_medicine, mmlu_medical_genetics, mmlu_professional_medicine and pubmedqa.
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![image/png](https://cdn-uploads.huggingface.co/production/uploads/653f5b93cd52f288490edc83/kAzLH_rIk9QKujsuD2ErO.png)
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## Intended uses & limitations
|
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+
|
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+
Bio-Medical-Llama-3-8B model is intended for a wide range of applications within the biomedical field, including:
|
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+
|
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+
1. Research Support: Assisting researchers in literature review and data extraction from biomedical texts.
|
72 |
+
2. Clinical Decision Support: Providing information to support clinical decision-making processes.
|
73 |
+
3. Educational Tool: Serving as a resource for medical students and professionals seeking to expand their knowledge base.
|
74 |
+
|
75 |
+
## Limitations and Ethical Considerations
|
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+
|
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+
While Bio-Medical-Llama-3-8B model performs well in various biomedical NLP tasks, users should be aware of the following limitations:
|
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+
|
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+
> Biases: The model may inherit biases present in the training data. Efforts have been made to curate a balanced dataset, but some biases may persist.
|
80 |
+
|
81 |
+
> Accuracy: The model's responses are based on patterns in the data it has seen and may not always be accurate or up-to-date. Users should verify critical information from reliable sources.
|
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+
|
83 |
+
> Ethical Use: The model should be used responsibly, particularly in clinical settings where the stakes are high. It should complement, not replace, professional judgment and expertise.
|
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+
|
85 |
+
|
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+
## How to use
|
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+
|
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+
import transformers
|
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+
import torch
|
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+
|
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+
model_id = "ContactDoctor/Bio-Medical-Llama-3-8B"
|
92 |
+
|
93 |
+
pipeline = transformers.pipeline(
|
94 |
+
"text-generation",
|
95 |
+
model=model_id,
|
96 |
+
model_kwargs={"torch_dtype": torch.bfloat16},
|
97 |
+
device_map="auto",
|
98 |
+
)
|
99 |
+
|
100 |
+
messages = [
|
101 |
+
{"role": "system", "content": "You are an expert trained on healthcare and biomedical domain!"},
|
102 |
+
{"role": "user", "content": "I'm a 35-year-old male and for the past few months, I've been experiencing fatigue, increased sensitivity to cold, and dry, itchy skin. What is the diagnosis here?"},
|
103 |
+
]
|
104 |
+
|
105 |
+
prompt = pipeline.tokenizer.apply_chat_template(
|
106 |
+
messages,
|
107 |
+
tokenize=False,
|
108 |
+
add_generation_prompt=True
|
109 |
+
)
|
110 |
+
|
111 |
+
terminators = [
|
112 |
+
pipeline.tokenizer.eos_token_id,
|
113 |
+
pipeline.tokenizer.convert_tokens_to_ids("<|eot_id|>")
|
114 |
+
]
|
115 |
+
|
116 |
+
outputs = pipeline(
|
117 |
+
prompt,
|
118 |
+
max_new_tokens=256,
|
119 |
+
eos_token_id=terminators,
|
120 |
+
do_sample=True,
|
121 |
+
temperature=0.6,
|
122 |
+
top_p=0.9,
|
123 |
+
)
|
124 |
+
print(outputs[0]["generated_text"][len(prompt):])
|
125 |
+
|
126 |
+
## License
|
127 |
+
|
128 |
+
This model is licensed under the [Bio-Medical-Llama-3-8B (Non-Commercial Use Only)](./LICENSE). Please review the terms and conditions before using the model.
|
129 |
+
|
130 |
+
|
131 |
+
### Contact Information
|
132 |
+
|
133 |
+
For further information, inquiries, or issues related to Biomed-LLM, please contact:
|
134 |
+
|
135 |
+
Email: info@contactdoctor.in
|
136 |
+
|
137 |
+
Website: https://www.contactdoctor.in
|
138 |
+
|
139 |
+
### Training hyperparameters
|
140 |
+
|
141 |
+
The following hyperparameters were used during training:
|
142 |
+
- learning_rate: 0.0002
|
143 |
+
- train_batch_size: 12
|
144 |
+
- eval_batch_size: 8
|
145 |
+
- seed: 42
|
146 |
+
- gradient_accumulation_steps: 4
|
147 |
+
- total_train_batch_size: 32
|
148 |
+
- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
|
149 |
+
- lr_scheduler_type: cosine
|
150 |
+
- lr_scheduler_warmup_ratio: 0.03
|
151 |
+
- training_steps: 2000
|
152 |
+
- mixed_precision_training: Native AMP
|
153 |
+
|
154 |
+
### Framework versions
|
155 |
+
|
156 |
+
- PEFT 0.11.0
|
157 |
+
- Transformers 4.40.2
|
158 |
+
- Pytorch 2.1.2
|
159 |
+
- Datasets 2.19.1
|
160 |
+
- Tokenizers 0.19.1
|
161 |
+
|
162 |
+
### Citation
|
163 |
+
|
164 |
+
If you use Bio-Medical LLM in your research or applications, please cite it as follows:
|
165 |
+
|
166 |
+
@misc{ContactDoctor_Bio-Medical-Llama-3-8B,
|
167 |
+
author = ContactDoctor,
|
168 |
+
title = {Bio-Medical: A High-Performance Biomedical Language Model},
|
169 |
+
year = {2024},
|
170 |
+
howpublished = {https://huggingface.co/ContactDoctor/Bio-Medical-Llama-3-8B},
|
171 |
+
}
|