ncfrey commited on
Commit
8423575
1 Parent(s): 1cf609b

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +44 -0
README.md ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ tags:
3
+ - chemistry
4
+ ---
5
+
6
+ # ChemGPT 1.2B
7
+ ChemGPT is based on the GPT-Neo model and was introduced in the paper [Neural Scaling of Deep Chemical Models](https://chemrxiv.org/engage/chemrxiv/article-details/627bddd544bdd532395fb4b5).
8
+
9
+ ## Model description
10
+ ChemGPT is a transformers model for generative molecular modeling, which was pretrained on the PubChem10M dataset.
11
+
12
+ ## Intended uses & limitations
13
+
14
+ ### How to use
15
+ You can use this model directly from the 🤗/transformers library.
16
+
17
+ ### Limitations and bias
18
+ This model was trained on a subset of molecules from PubChem. You can use this model to generate molecules, but it is mostly intended to be used for investigations of the effects of pre-training and fine-tuning on downstream datasets.
19
+
20
+ ## Training data
21
+ PubChem10M, a dataset of SMILES strings from PubChem, available via [DeepChem](https://deepchemdata.s3-us-west-1.amazonaws.com/datasets/pubchem_10m.txt.zip).
22
+
23
+ ## Training procedure
24
+
25
+ ### Preprocessing
26
+ SMILES strings were converted to SELFIES using version 1.0.4 of the SELFIES library.
27
+
28
+
29
+ ### Pretraining
30
+ See code in the [LitMatter repository](https://github.com/ncfrey/litmatter/blob/main/lit_models/lit_chemgpt.py).
31
+
32
+ ### BibTeX entry and citation info
33
+ ```
34
+ @article{frey_soklaski_axelrod_samsi_gomez-bombarelli_coley_gadepally_2022,
35
+ place={Cambridge}, title={Neural Scaling of Deep Chemical Models},
36
+ DOI={10.26434/chemrxiv-2022-3s512}, journal={ChemRxiv}, publisher={Cambridge Open Engage},
37
+ author={Frey, Nathan and Soklaski, Ryan and Axelrod, Simon and Samsi, Siddharth and Gomez-Bombarelli, Rafael and Coley, Connor and Gadepally, Vijay},
38
+ year={2022}} This content is a preprint and has not been peer-reviewed.
39
+ ```
40
+
41
+ ```
42
+ Frey, Nathan, Ryan Soklaski, Simon Axelrod, Siddharth Samsi, Rafael Gomez-Bombarelli, Connor Coley, and Vijay Gadepally.
43
+ "Neural Scaling of Deep Chemical Models." ChemRxiv (2022). Print. This content is a preprint and has not been peer-reviewed.
44
+ ```