panacea_v2.2 / README.md
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---
base_model: ai-forever/ruRoberta-large
datasets: []
language: []
library_name: sentence-transformers
pipeline_tag: sentence-similarity
tags:
- sentence-transformers
- sentence-similarity
- feature-extraction
- generated_from_trainer
- dataset_size:19383
- loss:MultipleNegativesRankingLoss
widget:
- source_sentence: '12.02.2.17 Панель ингаляционных аллергенов № 9 (IgE): эпителий
кошки, перхоть собаки, овсяница луговая'
sentences:
- Панель аллергенов плесени 1 IgE (penicillium notatum, cladosporium herbarum,
aspergillus fumigatus, candida albicans, alternaria tenuis),
- Панель пищевых аллергенов 51 IgE (помидор, картофель, морковь, чеснок, горчица),
- Прием (осмотр, консультация) врача-психотерапевта первичный
- source_sentence: '12.02.2.2.04 Панель пищевых аллергенов № 2 (IgG): треска, тунец,
креветки, лосось, мидии'
sentences:
- Панель пищевых аллергенов 5 IgE (яичный белок, молоко, треска, пшеничная мука,
арахис, соевые бобы),
- Панель пищевых аллергенов 7 IgE (яичный белок, рис, коровье молоко, aрахис,
пшеничная мука, соевые бобы),
- Панель ингаляционных аллергенов 3 IgE (клещ - дерматофаг перинный, эпителий
кошки, эпителий собаки, плесневый гриб (Aspergillus fumigatus)),
- source_sentence: 12.4.6.04 Аллерген f27 - говядина, IgE (ImmunoCAP)
sentences:
- Панель ингаляционных аллергенов 3 IgE (клещ - дерматофаг перинный, эпителий
кошки, эпителий собаки, плесневый гриб (Aspergillus fumigatus)),
- Панель аллергенов животных/перья птиц/ 71 IgE (перо гуся, перо курицы, перо
утки, перо индюка),
- Панель ингаляционных аллергенов 6 IgE (плесневый гриб (Cladosporium herbarum),
тимофеевка, плесневый гриб (Alternaria tenuis), береза, полынь обыкновенная),
- source_sentence: Микробиологическое исследование биосубстатов на микрофлору (отделяемое
зева, носа, глаз, ушей, гениталий, ран,мокрота) с постановкой чувствительности
[Мартьянова]
sentences:
- Панель ингаляционных аллергенов 9 IgE (эпителий кошки, перхоть собаки, овсяница
луговая, плесневый гриб (Alternaria tenuis), подорожник),
- Панель аллергенов плесени 1 IgE (penicillium notatum, cladosporium herbarum,
aspergillus fumigatus, candida albicans, alternaria tenuis),
- Посев отделяемого верхних дыхательных путей на микрофлору, определение чувствительности
к антимикробным препаратам (одна локализация) (Upper Respiratory Culture. Bacteria
Identification and Antibiotic Susceptibility Testing)*
- source_sentence: НЕТ ДО 20.04!!!!!!!! 12.01.16 Аллергокомпонент f77 - бета-лактоглобулин
nBos d 5, IgE (ImmunoCAP)
sentences:
- Ультразвуковое исследование плода
- Панель аллергенов животных 70 IgE (эпителий морской свинки, эпителий кролика,
хомяк, крыса, мышь),
- Панель пищевых аллергенов 15 IgE (апельсин, банан, яблоко, персик),
---
# SentenceTransformer based on ai-forever/ruRoberta-large
This is a [sentence-transformers](https://www.SBERT.net) model finetuned from [ai-forever/ruRoberta-large](https://huggingface.co/ai-forever/ruRoberta-large). It maps sentences & paragraphs to a 1024-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.
## Model Details
### Model Description
- **Model Type:** Sentence Transformer
- **Base model:** [ai-forever/ruRoberta-large](https://huggingface.co/ai-forever/ruRoberta-large) <!-- at revision 5192d064ca6ac67c14c40e017ce41612e010f05f -->
- **Maximum Sequence Length:** 514 tokens
- **Output Dimensionality:** 1024 tokens
- **Similarity Function:** Cosine Similarity
<!-- - **Training Dataset:** Unknown -->
<!-- - **Language:** Unknown -->
<!-- - **License:** Unknown -->
### Model Sources
- **Documentation:** [Sentence Transformers Documentation](https://sbert.net)
- **Repository:** [Sentence Transformers on GitHub](https://github.com/UKPLab/sentence-transformers)
- **Hugging Face:** [Sentence Transformers on Hugging Face](https://huggingface.co/models?library=sentence-transformers)
### Full Model Architecture
```
SentenceTransformer(
(0): Transformer({'max_seq_length': 514, 'do_lower_case': False}) with Transformer model: RobertaModel
(1): Pooling({'word_embedding_dimension': 1024, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
)
```
## Usage
### Direct Usage (Sentence Transformers)
First install the Sentence Transformers library:
```bash
pip install -U sentence-transformers
```
Then you can load this model and run inference.
```python
from sentence_transformers import SentenceTransformer
# Download from the 🤗 Hub
model = SentenceTransformer("sentence_transformers_model_id")
# Run inference
sentences = [
'НЕТ ДО 20.04!!!!!!!! 12.01.16 Аллергокомпонент f77 - бета-лактоглобулин nBos d 5, IgE (ImmunoCAP)',
'Панель аллергенов животных № 70 IgE (эпителий морской свинки, эпителий кролика, хомяк, крыса, мышь),',
'Ультразвуковое исследование плода',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 1024]
# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [3, 3]
```
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You can finetune this model on your own dataset.
<details><summary>Click to expand</summary>
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## Training Details
### Training Dataset
#### Unnamed Dataset
* Size: 19,383 training samples
* Columns: <code>sentence_0</code> and <code>sentence_1</code>
* Approximate statistics based on the first 1000 samples:
| | sentence_0 | sentence_1 |
|:--------|:----------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------|
| type | string | string |
| details | <ul><li>min: 5 tokens</li><li>mean: 30.0 tokens</li><li>max: 121 tokens</li></ul> | <ul><li>min: 5 tokens</li><li>mean: 30.73 tokens</li><li>max: 105 tokens</li></ul> |
* Samples:
| sentence_0 | sentence_1 |
|:-------------------------------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------|
| <code>Ингибитор VIII фактора</code> | <code>Исследование уровня антигена фактора Виллебранда</code> |
| <code>13.01.02 Антитела к экстрагируемому нуклеарному АГ (ЭНА/ENA-скрин), сыворотка крови</code> | <code>Антитела к экстрагируемому ядерному антигену, кач.</code> |
| <code>Нет 12.4.092 Аллерген f203 - фисташковые орехи, IgE</code> | <code>Панель аллергенов деревьев № 2 IgE (клен ясенелистный, тополь, вяз, дуб, пекан),</code> |
* Loss: [<code>MultipleNegativesRankingLoss</code>](https://sbert.net/docs/package_reference/sentence_transformer/losses.html#multiplenegativesrankingloss) with these parameters:
```json
{
"scale": 20.0,
"similarity_fct": "cos_sim"
}
```
### Training Hyperparameters
#### Non-Default Hyperparameters
- `per_device_train_batch_size`: 4
- `per_device_eval_batch_size`: 4
- `num_train_epochs`: 11
- `multi_dataset_batch_sampler`: round_robin
#### All Hyperparameters
<details><summary>Click to expand</summary>
- `overwrite_output_dir`: False
- `do_predict`: False
- `eval_strategy`: no
- `prediction_loss_only`: True
- `per_device_train_batch_size`: 4
- `per_device_eval_batch_size`: 4
- `per_gpu_train_batch_size`: None
- `per_gpu_eval_batch_size`: None
- `gradient_accumulation_steps`: 1
- `eval_accumulation_steps`: None
- `learning_rate`: 5e-05
- `weight_decay`: 0.0
- `adam_beta1`: 0.9
- `adam_beta2`: 0.999
- `adam_epsilon`: 1e-08
- `max_grad_norm`: 1
- `num_train_epochs`: 11
- `max_steps`: -1
- `lr_scheduler_type`: linear
- `lr_scheduler_kwargs`: {}
- `warmup_ratio`: 0.0
- `warmup_steps`: 0
- `log_level`: passive
- `log_level_replica`: warning
- `log_on_each_node`: True
- `logging_nan_inf_filter`: True
- `save_safetensors`: True
- `save_on_each_node`: False
- `save_only_model`: False
- `restore_callback_states_from_checkpoint`: False
- `no_cuda`: False
- `use_cpu`: False
- `use_mps_device`: False
- `seed`: 42
- `data_seed`: None
- `jit_mode_eval`: False
- `use_ipex`: False
- `bf16`: False
- `fp16`: False
- `fp16_opt_level`: O1
- `half_precision_backend`: auto
- `bf16_full_eval`: False
- `fp16_full_eval`: False
- `tf32`: None
- `local_rank`: 0
- `ddp_backend`: None
- `tpu_num_cores`: None
- `tpu_metrics_debug`: False
- `debug`: []
- `dataloader_drop_last`: False
- `dataloader_num_workers`: 0
- `dataloader_prefetch_factor`: None
- `past_index`: -1
- `disable_tqdm`: False
- `remove_unused_columns`: True
- `label_names`: None
- `load_best_model_at_end`: False
- `ignore_data_skip`: False
- `fsdp`: []
- `fsdp_min_num_params`: 0
- `fsdp_config`: {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}
- `fsdp_transformer_layer_cls_to_wrap`: None
- `accelerator_config`: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}
- `deepspeed`: None
- `label_smoothing_factor`: 0.0
- `optim`: adamw_torch
- `optim_args`: None
- `adafactor`: False
- `group_by_length`: False
- `length_column_name`: length
- `ddp_find_unused_parameters`: None
- `ddp_bucket_cap_mb`: None
- `ddp_broadcast_buffers`: False
- `dataloader_pin_memory`: True
- `dataloader_persistent_workers`: False
- `skip_memory_metrics`: True
- `use_legacy_prediction_loop`: False
- `push_to_hub`: False
- `resume_from_checkpoint`: None
- `hub_model_id`: None
- `hub_strategy`: every_save
- `hub_private_repo`: False
- `hub_always_push`: False
- `gradient_checkpointing`: False
- `gradient_checkpointing_kwargs`: None
- `include_inputs_for_metrics`: False
- `eval_do_concat_batches`: True
- `fp16_backend`: auto
- `push_to_hub_model_id`: None
- `push_to_hub_organization`: None
- `mp_parameters`:
- `auto_find_batch_size`: False
- `full_determinism`: False
- `torchdynamo`: None
- `ray_scope`: last
- `ddp_timeout`: 1800
- `torch_compile`: False
- `torch_compile_backend`: None
- `torch_compile_mode`: None
- `dispatch_batches`: None
- `split_batches`: None
- `include_tokens_per_second`: False
- `include_num_input_tokens_seen`: False
- `neftune_noise_alpha`: None
- `optim_target_modules`: None
- `batch_eval_metrics`: False
- `batch_sampler`: batch_sampler
- `multi_dataset_batch_sampler`: round_robin
</details>
### Training Logs
<details><summary>Click to expand</summary>
| Epoch | Step | Training Loss |
|:-------:|:-----:|:-------------:|
| 0.1032 | 500 | 0.7937 |
| 0.2064 | 1000 | 0.5179 |
| 0.3095 | 1500 | 0.5271 |
| 0.4127 | 2000 | 0.5696 |
| 0.5159 | 2500 | 0.5232 |
| 0.6191 | 3000 | 0.6401 |
| 0.7222 | 3500 | 0.6337 |
| 0.8254 | 4000 | 0.9436 |
| 0.9286 | 4500 | 1.3872 |
| 1.0318 | 5000 | 1.3834 |
| 1.1350 | 5500 | 0.9831 |
| 1.2381 | 6000 | 1.0122 |
| 1.3413 | 6500 | 1.3708 |
| 1.4445 | 7000 | 1.3794 |
| 1.5477 | 7500 | 1.3784 |
| 1.6508 | 8000 | 1.3856 |
| 1.7540 | 8500 | 1.3809 |
| 1.8572 | 9000 | 1.3776 |
| 1.9604 | 9500 | 1.0041 |
| 2.0636 | 10000 | 0.8559 |
| 2.1667 | 10500 | 0.8531 |
| 2.2699 | 11000 | 0.8446 |
| 2.3731 | 11500 | 0.8487 |
| 2.4763 | 12000 | 1.0807 |
| 2.5794 | 12500 | 1.3792 |
| 2.6826 | 13000 | 1.3923 |
| 2.7858 | 13500 | 1.3787 |
| 2.8890 | 14000 | 1.3803 |
| 2.9922 | 14500 | 1.3641 |
| 3.0953 | 15000 | 1.3725 |
| 3.1985 | 15500 | 1.3624 |
| 3.3017 | 16000 | 1.3659 |
| 3.4049 | 16500 | 1.3609 |
| 3.5080 | 17000 | 1.3496 |
| 3.6112 | 17500 | 1.3639 |
| 3.7144 | 18000 | 1.3487 |
| 3.8176 | 18500 | 1.3463 |
| 3.9208 | 19000 | 1.336 |
| 4.0239 | 19500 | 1.3451 |
| 4.1271 | 20000 | 1.3363 |
| 4.2303 | 20500 | 1.3411 |
| 4.3335 | 21000 | 1.3376 |
| 4.4366 | 21500 | 1.3294 |
| 4.5398 | 22000 | 1.3281 |
| 4.6430 | 22500 | 1.3323 |
| 4.7462 | 23000 | 1.3411 |
| 4.8494 | 23500 | 1.3162 |
| 4.9525 | 24000 | 1.3204 |
| 5.0557 | 24500 | 1.324 |
| 5.1589 | 25000 | 1.3253 |
| 5.2621 | 25500 | 1.3283 |
| 5.3652 | 26000 | 1.3298 |
| 5.4684 | 26500 | 1.3144 |
| 5.5716 | 27000 | 1.3162 |
| 5.6748 | 27500 | 1.3148 |
| 5.7780 | 28000 | 1.3254 |
| 5.8811 | 28500 | 1.319 |
| 5.9843 | 29000 | 1.3134 |
| 6.0875 | 29500 | 1.3184 |
| 6.1907 | 30000 | 1.3049 |
| 6.2939 | 30500 | 1.3167 |
| 6.3970 | 31000 | 1.3192 |
| 6.5002 | 31500 | 1.2926 |
| 6.6034 | 32000 | 1.3035 |
| 6.7066 | 32500 | 1.3117 |
| 6.8097 | 33000 | 1.3093 |
| 6.9129 | 33500 | 1.278 |
| 7.0161 | 34000 | 1.3143 |
| 7.1193 | 34500 | 1.3144 |
| 7.2225 | 35000 | 1.304 |
| 7.3256 | 35500 | 1.3066 |
| 7.4288 | 36000 | 1.2916 |
| 7.5320 | 36500 | 1.2943 |
| 7.6352 | 37000 | 1.2883 |
| 7.7383 | 37500 | 1.3014 |
| 7.8415 | 38000 | 1.3005 |
| 7.9447 | 38500 | 1.2699 |
| 8.0479 | 39000 | 1.3042 |
| 8.1511 | 39500 | 1.289 |
| 8.2542 | 40000 | 1.3012 |
| 8.3574 | 40500 | 1.3017 |
| 8.4606 | 41000 | 1.272 |
| 8.5638 | 41500 | 1.2939 |
| 8.6669 | 42000 | 1.2764 |
| 8.7701 | 42500 | 1.2908 |
| 8.8733 | 43000 | 1.2619 |
| 8.9765 | 43500 | 1.2791 |
| 9.0797 | 44000 | 1.2722 |
| 9.1828 | 44500 | 1.278 |
| 9.2860 | 45000 | 1.2911 |
| 9.3892 | 45500 | 1.2791 |
| 9.4924 | 46000 | 1.2791 |
| 9.5955 | 46500 | 1.2782 |
| 9.6987 | 47000 | 1.2789 |
| 9.8019 | 47500 | 1.2858 |
| 9.9051 | 48000 | 1.2601 |
| 10.0083 | 48500 | 1.29 |
| 10.1114 | 49000 | 1.276 |
| 10.2146 | 49500 | 1.2801 |
| 10.3178 | 50000 | 1.2853 |
| 10.4210 | 50500 | 1.2655 |
| 10.5241 | 51000 | 1.271 |
| 10.6273 | 51500 | 1.2633 |
| 10.7305 | 52000 | 1.2565 |
| 10.8337 | 52500 | 1.2755 |
| 10.9369 | 53000 | 1.2567 |
</details>
### Framework Versions
- Python: 3.10.12
- Sentence Transformers: 3.0.1
- Transformers: 4.41.2
- PyTorch: 2.3.0+cu121
- Accelerate: 0.31.0
- Datasets: 2.20.0
- Tokenizers: 0.19.1
## Citation
### BibTeX
#### Sentence Transformers
```bibtex
@inproceedings{reimers-2019-sentence-bert,
title = "Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks",
author = "Reimers, Nils and Gurevych, Iryna",
booktitle = "Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing",
month = "11",
year = "2019",
publisher = "Association for Computational Linguistics",
url = "https://arxiv.org/abs/1908.10084",
}
```
#### MultipleNegativesRankingLoss
```bibtex
@misc{henderson2017efficient,
title={Efficient Natural Language Response Suggestion for Smart Reply},
author={Matthew Henderson and Rami Al-Rfou and Brian Strope and Yun-hsuan Sung and Laszlo Lukacs and Ruiqi Guo and Sanjiv Kumar and Balint Miklos and Ray Kurzweil},
year={2017},
eprint={1705.00652},
archivePrefix={arXiv},
primaryClass={cs.CL}
}
```
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