metadata
pipeline_tag: sentence-similarity
tags:
- sentence-transformers
- feature-extraction
- sentence-similarity
jglaser/protein-ligand-mlp-2
This is a sentence-transformers model: It maps sentences & paragraphs to a 1 dimensional dense vector space and can be used for tasks like clustering or semantic search.
Usage (Sentence-Transformers)
Using this model becomes easy when you have sentence-transformers installed:
pip install -U sentence-transformers
Then you can use the model like this:
from sentence_transformers import SentenceTransformer
sentences = ["This is an example sentence", "Each sentence is converted"]
model = SentenceTransformer('jglaser/protein-ligand-mlp-2')
embeddings = model.encode(sentences)
print(embeddings)
Evaluation Results
For an automated evaluation of this model, see the Sentence Embeddings Benchmark: https://seb.sbert.net
Full Model Architecture
SentenceTransformer(
(0): Asym(
(protein-0): Transformer({'max_seq_length': 2048, 'do_lower_case': False}) with Transformer model: BertModel
(protein-1): Pooling({'word_embedding_dimension': 1024, 'pooling_mode_cls_token': True, 'pooling_mode_mean_tokens': False, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
(protein-2): Dense({'in_features': 1024, 'out_features': 1024, 'bias': True, 'activation_function': 'torch.nn.modules.activation.Tanh'})
(ligand-0): Transformer({'max_seq_length': 512, 'do_lower_case': False}) with Transformer model: BertModel
(ligand-1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': True, 'pooling_mode_mean_tokens': False, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
(ligand-2): Dense({'in_features': 768, 'out_features': 768, 'bias': True, 'activation_function': 'torch.nn.modules.activation.Tanh'})
)
(1): Dense({'in_features': 1792, 'out_features': 1000, 'bias': True, 'activation_function': 'torch.nn.modules.activation.GELU'})
(2): Dense({'in_features': 1000, 'out_features': 1000, 'bias': True, 'activation_function': 'torch.nn.modules.activation.GELU'})
(3): Dense({'in_features': 1000, 'out_features': 1000, 'bias': True, 'activation_function': 'torch.nn.modules.activation.GELU'})
(4): Dense({'in_features': 1000, 'out_features': 1, 'bias': True, 'activation_function': 'torch.nn.modules.linear.Identity'})
(5): Dense({'in_features': 1, 'out_features': 1, 'bias': True, 'activation_function': 'torch.nn.modules.linear.Identity'})
)