Training in progress, epoch 1

.gitignore

@@ -0,0 +1 @@
+checkpoint-*/

config.json

@@ -0,0 +1,51 @@
+{
+  "_name_or_path": "microsoft/biogpt",
+  "activation_dropout": 0.0,
+  "activation_function": "gelu_new",
+  "architectures": [
+    "GPT2ForTokenClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "attn_pdrop": 0.1,
+  "bos_token_id": 0,
+  "embd_pdrop": 0.1,
+  "eos_token_id": 2,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "id2label": {
+    "0": "O",
+    "1": "B-Disease",
+    "2": "I-Disease"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 4096,
+  "label2id": {
+    "B-Disease": 1,
+    "I-Disease": 2,
+    "O": 0
+  },
+  "layer_norm_eps": 1e-12,
+  "layer_norm_epsilon": 1e-05,
+  "layerdrop": 0.0,
+  "model_type": "gpt2",
+  "n_embd": 1024,
+  "n_head": 16,
+  "n_inner": null,
+  "n_layer": 24,
+  "n_positions": 1024,
+  "pad_token_id": 1,
+  "reorder_and_upcast_attn": false,
+  "resid_pdrop": 0.1,
+  "scale_attn_by_inverse_layer_idx": false,
+  "scale_attn_weights": true,
+  "scale_embedding": true,
+  "summary_activation": null,
+  "summary_first_dropout": 0.1,
+  "summary_proj_to_labels": true,
+  "summary_type": "cls_index",
+  "summary_use_proj": true,
+  "torch_dtype": "float32",
+  "transformers_version": "4.28.1",
+  "use_cache": true,
+  "vocab_size": 42384
+}

pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5847a730c96455cc0ab8d4131772986030b306dfea601824db0602efa55ee963
+size 1412334373

runs/Apr15_23-50-33_5ffdcffa4ca2/1681602639.0847516/events.out.tfevents.1681602639.5ffdcffa4ca2.23201.1

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5c84ac0d03aaa3857097520bb75c9c28373aca12db0c86f129e5be1bf18acd5d
+size 5867

runs/Apr15_23-50-33_5ffdcffa4ca2/events.out.tfevents.1681602639.5ffdcffa4ca2.23201.0

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3c28a723bd9b56c8d6410ea862a26a0bacd89500dec703f914ace6083dc04d5c
+size 4973

special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "bos_token": "<s>",
+  "eos_token": "</s>",
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "unk_token": "<unk>"
+}

tokenizer_config.json

@@ -0,0 +1,10 @@
+{
+  "bos_token": "<s>",
+  "clean_up_tokenization_spaces": true,
+  "eos_token": "</s>",
+  "model_max_length": 1024,
+  "pad_token": "<pad>",
+  "sep_token": "</s>",
+  "tokenizer_class": "BioGptTokenizer",
+  "unk_token": "<unk>"
+}

training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3372abbacfee45768f552b1d6051a3d27767a7fa3a3afadb9d998e8177bb2e0d
+size 3579