stefan-insilico
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2629133
Removed unnecessary instructions from examples
Browse files
README.md
CHANGED
@@ -193,7 +193,7 @@ Here, we ask the model to generate a signature for a male human within in the 70
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```json
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{
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"inputs": {
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-
"instruction": ["age_group2diff2age_group", "disease2diff2disease"
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"tissue": ["lung"],
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"age": "",
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"cell": "",
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@@ -216,7 +216,7 @@ See the corresponding P3GPT output:
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},
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"mode": "meta2diff", // generation mode we specified
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"message": "Done!",
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"input": "[BOS]<age_group2diff2age_group><disease2diff2disease><
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"random_seed": 137
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}
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```
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@@ -227,13 +227,12 @@ _**Example 2: generate an aging signature**_
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<summary style="font-weight:600">Details</summary>
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Now, let's generate a signature for the whole blood of a healthy male human in the 70-90 years age group.
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Note
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Alternatively, we can add one more instruction to example 2 — "instruction": ["disease2diff2disease", "age_group2diff2age_group"]
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```json
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{
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"inputs": {
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-
"instruction": ["
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"tissue": ["whole blood"],
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"age": "",
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"cell": "",
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@@ -262,7 +261,7 @@ P3GPT's output:
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},
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"mode": "meta2diff",
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"message": "Done!",
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"input": "[BOS]<
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"random_seed": 137
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}
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```
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```json
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{
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"inputs": {
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+
"instruction": ["age_group2diff2age_group", "disease2diff2disease"],
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"tissue": ["lung"],
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"age": "",
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"cell": "",
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},
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"mode": "meta2diff", // generation mode we specified
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"message": "Done!",
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+
"input": "[BOS]<age_group2diff2age_group><disease2diff2disease><tissue>lung </tissue><cell></cell><efo>EFO_0000768 </efo><datatype></datatype><drug></drug><dose></dose><time></time><case>70.0-80.0 80.0-90.0 </case><control></control><dataset_type>expression </dataset_type><gender>m </gender><species>human </species>", // actual input prompt for the model
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"random_seed": 137
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}
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```
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<summary style="font-weight:600">Details</summary>
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Now, let's generate a signature for the whole blood of a healthy male human in the 70-90 years age group.
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+
Note, here we expect to generate the signatures for a healthy human, that's why we set ```efo``` to an empty string "".
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```json
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{
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"inputs": {
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+
"instruction": ["age_group2diff2age_group"],
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"tissue": ["whole blood"],
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"age": "",
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"cell": "",
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},
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"mode": "meta2diff",
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"message": "Done!",
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+
"input": "[BOS]<age_group2diff2age_group><tissue>whole blood </tissue><cell></cell><efo></efo><datatype></datatype><drug></drug><dose></dose><time></time><case>40.0-50.0 </case><control></control><dataset_type>expression </dataset_type><gender>m </gender><species>human </species>",
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"random_seed": 137
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}
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```
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